Evidence map›Paper›PMID 26318090›Full record

ArticleJournal of biological physics2016

In search of coding and non-coding regions of DNA sequences based on balanced estimation of diffusion entropy.

Jin Zhang, Wenqing Zhang, Huijie Yang

Abstract read
In one paragraph

Article in Journal of biological physics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Jin ZhangBusiness School, University of Shanghai for Science and Technology, Shanghai, 200093, China. zdypaper@163.com.
Wenqing ZhangBusiness School, University of Shanghai for Science and Technology, Shanghai, 200093, China.
Huijie YangBusiness School, University of Shanghai for Science and Technology, Shanghai, 200093, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Identification of coding regions in DNA sequences remains challenging. Various methods have been proposed, but these are limited by species-dependence and the need for adequate training sets. The elements in DNA coding regions are known to be distributed in a quasi-random way, while those in non-coding regions have typical similar structures. For short sequences, these statistical characteristics cannot be extracted correctly and cannot even be detected. This paper introduces a new way to solve the problem: balanced estimation of diffusion entropy (BEDE).

Indexed as

EntropyModels, GeneticBase SequenceDiffusionDNA, FungalDNA, FungalBEDECoding regionsDiffusion entropyNon-coding regionsSelf-similar structureTime series

Identifiers

PMID26318090
PMCPMC4713410

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.