Evidence map›Paper›PMID 26317213›Full record

ArticlePloS one2015

Characterization of Peptidyl-Prolyl Cis-Trans Isomerase- and Calmodulin-Binding Activity of a Cytosolic Arabidopsis thaliana Cyclophilin AtCyp19-3.

Gundeep Kaur, Supreet Singh, Harpreet Singh, Mrinalini Chawla, Tanima Dutta, Harsimran Kaur, Kyle Bender, W A Snedden, Sanjay Kapoor, Ashwani Pareek and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 35 citations in OpenAlex.

  1. Proteomic analysis of rose apple reveals defense proteins activated during Lasiodiplodia theobromae infection.International microbiology : the official journal of the Spanish Society for Microbiology · 2026
    Article
  2. Review
  3. Article
  4. Novel resources to investigate leaf plasmodesmata formation in CThe Plant journal : for cell and molecular biology · 2024
    Article
  5. Genome-wide identification and expression analyses ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2024
    Article
  6. Article
  7. Article
  8. Article
  9. Novel molecules and target genes for vegetative heat tolerance in wheat.Plant-environment interactions (Hoboken, N.J.) · 2022
    Article
  10. Article
  11. Molecular Programming of Drought-ChallengedFrontiers in microbiology · 2021
    Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Functional Analysis of Peptidyl-prolylInternational journal of molecular sciences · 2019
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Gundeep KaurDepartment of Biotechnology, Guru Nanak Dev University, Amritsar-143005, Punjab, India.
Supreet SinghDepartment of Biotechnology, Guru Nanak Dev University, Amritsar-143005, Punjab, India.
Harpreet SinghDepartment of Biotechnology, Guru Nanak Dev University, Amritsar-143005, Punjab, India; Department of Bioinformatics, Hans Raj Mahila Maha Vidayalaya, Jalandhar, Punjab, India.
Mrinalini ChawlaInterdiscipinary Center for Plant Genomics and Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi, India.
Tanima DuttaDepartment of Biotechnology, Guru Nanak Dev University, Amritsar-143005, Punjab, India.
Harsimran KaurDepartment of Biotechnology, Guru Nanak Dev University, Amritsar-143005, Punjab, India.
Kyle BenderDepartment of Biology, Queen's University, Kingston, Ontario, Canada.
W A SneddenDepartment of Biology, Queen's University, Kingston, Ontario, Canada.
Sanjay KapoorInterdiscipinary Center for Plant Genomics and Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi, India.
Ashwani PareekStress Physiology and Molecular Biology Laboratory, School of Life Sciences, Jawaharlal, Nehru University, New Delhi, India.
Prabhjeet SinghDepartment of Biotechnology, Guru Nanak Dev University, Amritsar-143005, Punjab, India.
Guru Nanak Dev University · INQueen's University · CAUniversity of Delhi · INHans Raj Mahila Maha Vidyalaya · INJawaharlal Nehru University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cyclophilins, which bind to immunosuppressant cyclosporin A (CsA), are ubiquitous proteins and constitute a multigene family in higher organisms. Several members of this family are reported to catalyze cis-trans isomerisation of the peptidyl-prolyl bond, which is a rate limiting step in protein folding. The physiological role of these proteins in plants, with few exceptions, is still a matter of speculation. Although Arabidopsis genome is predicted to contain 35 cyclophilin genes, biochemical characterization, imperative for understanding their cellular function(s), has been carried only for few of the members. The present study reports the biochemical characterization of an Arabidopsis cyclophilin, AtCyp19-3, which demonstrated that this protein is enzymatically active and possesses peptidyl-prolyl cis-trans isomerase (PPIase) activity that is specifically inhibited by CsA with an inhibition constant (Ki) of 18.75 nM. The PPIase activity of AtCyp19-3 was also sensitive to Cu(2+), which covalently reacts with the sulfhydryl groups, implying redox regulation. Further, using calmodulin (CaM) gel overlay assays it was demonstrated that in vitro interaction of AtCyp19-3 with CaM is Ca(2+)-dependent, and CaM-binding domain is localized to 35-70 amino acid residues in the N-terminus. Bimolecular fluorescence complementation assays showed that AtCyp19-3 interacts with CaM in vivo also, thus, validating the in vitro observations. However, the PPIase activity of the Arabidopsis cyclophilin was not affected by CaM. The implications of these findings are discussed in the context of Ca(2+) signaling and cyclophilin activity in Arabidopsis.

Indexed as

ArabidopsisArabidopsis ProteinsCalcium SignalingCalmodulinCopperCyclophilinsProtein Structure, TertiaryArabidopsis ProteinsCalmodulinCopperCyclophilins

Identifiers

PMID26317213
PMCPMC4552658
OpenAlexW1930134848

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.