Evidence map›Paper›PMID 26316535›Full record

ArticleThe Journal of biological chemistry2015

Modeling of the N-terminal Section and the Lumenal Loop of Trimeric Light Harvesting Complex II (LHCII) by Using EPR.

Niklas Fehr, Carsten Dietz, Yevhen Polyhach, Tona von Hagens, Gunnar Jeschke, Harald Paulsen

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 21 citations in OpenAlex.

  1. Protein Modeling with DEER Spectroscopy.Annual review of biophysics · 2025
    Review
  2. Article
  3. Article
  4. Neural network interpretation using descrambler groups.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  5. Article
  6. Photoprotective Role of Neoxanthin in Plants and Algae.Molecules (Basel, Switzerland) · 2020
    Review
  7. Article
  8. Article
  9. The contribution of modern EPR to structural biology.Emerging topics in life sciences · 2018
    Article
  10. MMM: A toolbox for integrative structure modeling.Protein science : a publication of the Protein Society · 2018
    Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Niklas FehrFrom the Department of General Botany, Johannes Gutenberg-University, 55128 Mainz, Germany and.
Carsten DietzFrom the Department of General Botany, Johannes Gutenberg-University, 55128 Mainz, Germany and.
Yevhen Polyhachthe Department of Physical Chemistry, ETH Zürich, Vladimir Prelog-Weg 2, CH-8093 Zürich, Switzerland.
Tona von Hagensthe Department of Physical Chemistry, ETH Zürich, Vladimir Prelog-Weg 2, CH-8093 Zürich, Switzerland.
Gunnar Jeschkethe Department of Physical Chemistry, ETH Zürich, Vladimir Prelog-Weg 2, CH-8093 Zürich, Switzerland.
Harald PaulsenFrom the Department of General Botany, Johannes Gutenberg-University, 55128 Mainz, Germany and paulsen@uni-mainz.de.
Johannes Gutenberg University Mainz · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The major light harvesting complex II (LHCII) of green plants plays a key role in the absorption of sunlight, the regulation of photosynthesis, and in preventing photodamage by excess light. The latter two functions are thought to involve the lumenal loop and the N-terminal domain. Their structure and mobility in an aqueous environment are only partially known. Electron paramagnetic resonance (EPR) has been used to measure the structure of these hydrophilic protein domains in detergent-solubilized LHCII. A new technique is introduced to prepare LHCII trimers in which only one monomer is spin-labeled. These heterogeneous trimers allow to measure intra-molecular distances within one LHCII monomer in the context of a trimer by using double electron-electron resonance (DEER). These data together with data from electron spin echo envelope modulation (ESEEM) allowed to model the N-terminal protein section, which has not been resolved in current crystal structures, and the lumenal loop domain. The N-terminal domain covers only a restricted area above the superhelix in LHCII, which is consistent with the "Velcro" hypothesis to explain thylakoid grana stacking (Standfuss, J., van Terwisscha Scheltinga, A. C., Lamborghini, M., and Kühlbrandt, W. (2005) EMBO J. 24, 919-928). The conformation of the lumenal loop domain is surprisingly different between LHCII monomers and trimers but not between complexes with and without neoxanthin bound.

Indexed as

Models, ChemicalBiopolymersElectron Spin Resonance SpectroscopyModels, MolecularPhotosystem II Protein ComplexProtein ConformationBiopolymersPhotosystem II Protein Complexelectron paramagnetic resonance (EPR)LHCIIlight-harvesting complex (antenna complex)lumenal loopmembrane proteinmolecular modelingN -terminusprotein structure

Identifiers

PMID26316535
PMCPMC4646254
OpenAlexW1960401670

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.