ArticleBioinformatics (Oxford, England)2015
InteractiveROSETTA: a graphical user interface for the PyRosetta protein modeling suite.
Article in Bioinformatics (Oxford, England), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
15 citing papers in PubMed.
- Hippo and PI5P4K signaling intersect to control the transcriptional activation of YAP.Science signaling · 2024Article
- An interactive visualization tool for educational outreach in protein contact map overlap analysis.Frontiers in bioinformatics · 2024Article
- Characterising ATP binding activity of PilB ATPase ofJournal of biosciences · 2023Article
- The structural basis of Akt PH domain interaction with calmodulin.Biophysical journal · 2021Article
- OsCBE1, a Substrate Receptor of Cullin4-Based E3 Ubiquitin Ligase, Functions as a Regulator of Abiotic Stress Response and Productivity in Rice.International journal of molecular sciences · 2021Article
- D-Amino acid substituted peptides as potential alternatives of homochiral L-configurations.Amino acids · 2021Article
- Macromolecular modeling and design in Rosetta: recent methods and frameworks.Nature methods · 2020Review
- Better together: Elements of successful scientific software development in a distributed collaborative community.PLoS computational biology · 2020Review
- Elfin UI: A Graphical Interface for Protein Design With Modular Building Blocks.Frontiers in bioengineering and biotechnology · 2020Article
- Article
- Fast design of arbitrary length loops in proteins using InteractiveRosetta.BMC bioinformatics · 2018Article
- Foldit Standalone: a video game-derived protein structure manipulation interface using Rosetta.Bioinformatics (Oxford, England) · 2017Article
- Simplifying and enhancing the use of PyMOL with horizontal scripts.Protein science : a publication of the Protein Society · 2016Article
- Protocols for Molecular Modeling with Rosetta3 and RosettaScripts.Biochemistry · 2016Review
- Protein backbone ensemble generation explores the local structural space of unseen natural homologs.Bioinformatics (Oxford, England) · 2016Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
2 authors.
Funding
Abstract
unlabelledModern biotechnical research is becoming increasingly reliant on computational structural modeling programs to develop novel solutions to scientific questions. Rosetta is one such protein modeling suite that has already demonstrated wide applicability to a number of diverse research projects. Unfortunately, Rosetta is largely a command-line-driven software package which restricts its use among non-computational researchers. Some graphical interfaces for Rosetta exist, but typically are not as sophisticated as commercial software. Here, we present InteractiveROSETTA, a graphical interface for the PyRosetta framework that presents easy-to-use controls for several of the most widely used Rosetta protocols alongside a sophisticated selection system utilizing PyMOL as a visualizer. InteractiveROSETTA is also capable of interacting with remote Rosetta servers, facilitating sophisticated protocols that are not accessible in PyRosetta or which require greater computational resources. AVAILABILITY AND IMPLEMENTATION: InteractiveROSETTA is freely available at https://github.com/schenc3/InteractiveROSETTA/releases and relies upon a separate download of PyRosetta which is available at http://www.pyrosetta.org after obtaining a license (free for academic use).
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.