Evidence map›Paper›PMID 26315821›Full record

ArticleProtoplasma2016

An antifungal protein from Ginkgo biloba binds actin and can trigger cell death.

Ningning Gao, Parvesh Wadhwani, Philipp Mühlhäuser, Qiong Liu, Michael Riemann, Anne S Ulrich, Peter Nick

Abstract read
PubMed Publisher
In one paragraph

Article in Protoplasma, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Dual transcriptomic analysis reveals early inducedFrontiers in plant science · 2024
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Expression Profiling ofFrontiers in plant science · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Ningning GaoMolecular Cell Biology, Botanical Institute and DFG-Center of Functional Nanostructures (CFN), Karlsruhe Institute of Technology (KIT), Kaiserstr. 2, 76128, Karlsruhe, Germany.
Parvesh WadhwaniInstitute for Biological Interfaces (IBG-2), KIT, P.O. Box 3640, 76021, Karlsruhe, Germany.
Philipp MühlhäuserInstitute for Biological Interfaces (IBG-2), KIT, P.O. Box 3640, 76021, Karlsruhe, Germany.
Qiong LiuMolecular Cell Biology, Botanical Institute and DFG-Center of Functional Nanostructures (CFN), Karlsruhe Institute of Technology (KIT), Kaiserstr. 2, 76128, Karlsruhe, Germany.
Michael RiemannMolecular Cell Biology, Botanical Institute and DFG-Center of Functional Nanostructures (CFN), Karlsruhe Institute of Technology (KIT), Kaiserstr. 2, 76128, Karlsruhe, Germany.
Anne S UlrichInstitute for Biological Interfaces (IBG-2), KIT, P.O. Box 3640, 76021, Karlsruhe, Germany.
Peter NickMolecular Cell Biology, Botanical Institute and DFG-Center of Functional Nanostructures (CFN), Karlsruhe Institute of Technology (KIT), Kaiserstr. 2, 76128, Karlsruhe, Germany. peter.nick@kit.edu.
Karlsruhe Institute of Technology · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ginkbilobin is a short antifungal protein that had been purified and cloned from the seeds of the living fossil Ginkgo biloba. Homologues of this protein can be detected in all seed plants and the heterosporic fern Selaginella and are conserved with respect to domain structures, peptide motifs, and specific cysteine signatures. To get insight into the cellular functions of these conserved motifs, we expressed green fluorescent protein fusions of full-length and truncated ginkbilobin in tobacco BY-2 cells. We show that the signal peptide confers efficient secretion of ginkbilobin. When this signal peptide is either cleaved or masked, ginkbilobin binds and visualizes the actin cytoskeleton. This actin-binding activity of ginkbilobin is mediated by a specific subdomain just downstream of the signal peptide, and this subdomain can also coassemble with actin in vitro. Upon stable overexpression of this domain, we observe a specific delay in premitotic nuclear positioning indicative of a reduced dynamicity of actin. To elucidate the cellular response to the binding of this subdomain to actin, we use chemical engineering based on synthetic peptides comprising different parts of the actin-binding subdomain conjugated with the cell-penetrating peptide BP100 and with rhodamine B as a fluorescent reporter. Binding of this synthetic construct to actin efficiently induces programmed cell death. We discuss these findings in terms of a working model, where ginkbilobin can activate actin-dependent cell death.

Indexed as

ActinsAntifungal AgentsAntimicrobial Cationic PeptidesCell DeathCell LineCell NucleusCell-Penetrating PeptidesGinkgo bilobaNicotianaPhylogenyPlant ProteinsProtein BindingProtein DomainsProtein TransportActinsAntifungal AgentsAntimicrobial Cationic PeptidesCell-Penetrating Peptidesginkbilobin-2 protein, Ginkgo bilobaPlant ProteinsActinAntifungal proteinCell-penetrating peptideProgrammed cell death

Identifiers

PMID26315821
OpenAlexW1806407050

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.