Evidence map›Paper›PMID 26314864›Full record

ArticleeLife2015

Distinct transcriptional responses elicited by unfolded nuclear or cytoplasmic protein in mammalian cells.

Yusuke Miyazaki, Ling-chun Chen, Bernard W Chu, Tomek Swigut, Thomas J Wandless

Open access · goldAbstract read
In one paragraph

Article in eLife, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
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  5. Article
  6. USP7 regulates ALS-associated proteotoxicity and quality control through the NEDD4L-SMAD pathway.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
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  9. Review
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  13. Review
  14. Targeted Protein Degradation by Small Molecules.Annual review of pharmacology and toxicology · 2017
    Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Yusuke MiyazakiDepartment of Chemical and Systems Biology, Stanford University, Stanford, United States.
Ling-chun ChenDepartment of Chemical and Systems Biology, Stanford University, Stanford, United States.
Bernard W ChuDepartment of Chemical and Systems Biology, Stanford University, Stanford, United States.
Tomek SwigutDepartment of Chemical and Systems Biology, Stanford University, Stanford, United States.
Thomas J WandlessDepartment of Chemical and Systems Biology, Stanford University, Stanford, United States.
Stanford University · US

Funding

TRAINING & OUTREACH COREP50GM107615 · NIGMS · STANFORD UNIVERSITY · PI COVERT, MARKUS W · 2013 to 2017
$10.9M
Novel Molecules as In Vivo Biological ProbesR01GM073046 · NIGMS · STANFORD UNIVERSITY · PI WANDLESS, THOMAS JAMES · 2006 to 2017
$3.6M
NIGMS NIH HHS GM073046NIGMS NIH HHS P50 GM107615NIGMS NIH HHS R01 GM073046
6 · The paper itself

Abstract

Eukaryotic cells possess a variety of signaling pathways that prevent accumulation of unfolded and misfolded proteins. Chief among these is the heat shock response (HSR), which is assumed to respond to unfolded proteins in the cytosol and nucleus alike. In this study, we probe this axiom further using engineered proteins called 'destabilizing domains', whose folding state we control with a small molecule. The sudden appearance of unfolded protein in mammalian cells elicits a robust transcriptional response, which is distinct from the HSR and other known pathways that respond to unfolded proteins. The cellular response to unfolded protein is strikingly different in the nucleus and the cytosol, although unfolded protein in either compartment engages the p53 network. This response provides cross-protection during subsequent proteotoxic stress, suggesting that it is a central component of protein quality control networks, and like the HSR, is likely to influence the initiation and progression of human pathologies.

Indexed as

Cell Physiological PhenomenaGene Expression RegulationSignal TransductionTranscription, GeneticUnfolded Protein ResponseAnimalsCell LineCell NucleusCytoplasmMicebiochemistrycell biologycellular stress responsechaperonemouseneurodegenerative diseaseprotein quality controlunfolded protein response

Identifiers

PMID26314864
PMCPMC4566031
OpenAlexW1911847067

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.