Evidence map›Paper›PMID 26313451›Full record

ArticlePloS one2015

Genetic Adaptation of Achromobacter sp. during Persistence in the Lungs of Cystic Fibrosis Patients.

Winnie Ridderberg, Signe Maria Nielsen, Niels Nørskov-Lauritsen

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
2.6field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 50 citations in OpenAlex.

  1. Early and matureBiofilm · 2026
    Article
  2. Differential Evolution ofPathogens (Basel, Switzerland) · 2026
    Article
  3. Review
  4. The cystic fibrosis pathogenJournal of medical microbiology · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Exoproducts of the Most CommonMicrobiology spectrum · 2023
    Article
  9. CompoundingViruses · 2023
    Article
  10. Article
  11. Article
  12. Review
  13. International journal of molecular sciences · 2022
    Article
  14. Characterization of theFrontiers in cellular and infection microbiology · 2022
    Article
  15. Adaptive Interactions ofPathogens (Basel, Switzerland) · 2021
    Article
  16. Microbial genomics · 2021
    Article
  17. Genomic characterization ofMicrobial genomics · 2021
    Article
  18. Genes · 2021
    Review
  19. Transmission and Antibiotic Resistance ofJournal of clinical microbiology · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Winnie RidderbergDepartment of Clinical Microbiology, Aarhus University Hospital, Aarhus, Denmark.
Signe Maria NielsenDepartment of Clinical Microbiology, Aarhus University Hospital, Aarhus, Denmark; Institute of Clinical Medicine, Health, Aarhus University, Aarhus, Denmark.
Niels Nørskov-LauritsenDepartment of Clinical Microbiology, Aarhus University Hospital, Aarhus, Denmark.
Aarhus University Hospital · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Achromobacter species are increasingly isolated from the respiratory tract of cystic fibrosis patients and often a chronic infection is established. How Achromobacter sp. adapts to the human host remains uncharacterised. By comparing longitudinally collected isolates of Achromobacter sp. isolated from five CF patients, we have investigated the within-host evolution of clonal lineages. The majority of identified mutations were isolate-specific suggesting co-evolution of several subpopulations from the original infecting isolate. The largest proportion of mutated genes were involved in the general metabolism of the bacterium, but genes involved in virulence and antimicrobial resistance were also affected. A number of virulence genes required for initiation of acute infection were selected against, e.g. genes of the type I and type III secretion systems and genes related to pilus and flagellum formation or function. Six antimicrobial resistance genes or their regulatory genes were mutated, including large deletions affecting the repressor genes of an RND-family efflux pump and a beta-lactamase. Convergent evolution was observed for five genes that were all implicated in bacterial virulence. Characterisation of genes involved in adaptation of Achromobacter to the human host is required for understanding the pathogen-host interaction and facilitate design of future therapeutic interventions.

Indexed as

AchromobacterAdaptation, BiologicalBacterial ProteinsBiological EvolutionCell WallCystic FibrosisDrug Resistance, BacterialFimbriae, BacterialGram-Negative Bacterial InfectionsHost-Pathogen InteractionsHumansLongitudinal StudiesMutationBacterial Proteins

Identifiers

PMID26313451
PMCPMC4552427
OpenAlexW1823010904

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.