Evidence map›Paper›PMID 26312485›Full record

ArticlePloS one2015

Exploring Genomic, Geographic and Virulence Interactions among Epidemic and Non-Epidemic St. Louis Encephalitis Virus (Flavivirus) Strains.

Luis A Diaz, Sandra E Goñi, Javier A Iserte, Agustín I Quaglia, Amber Singh, Christopher H Logue, Ann M Powers, Marta S Contigiani

Abstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Luis A DiazLaboratorio de Arbovirus, Instituto de Virología ''Dr. J. M. Vanella", Facultad de Ciencias Médicas, Universidad Nacional de Córdoba, Córdoba, Argentina; Instituto de Investigaciones Biológicas y Tecnológicas, CONICET-Universidad Nacional de Córdoba, Córdoba, Argentina.
Sandra E GoñiÁrea de Virosis Emergentes y Zoonóticas, Laboratorio de Ingeniería Genética y Biología Celular y Molecular, Instituto de Microbiología Básica y Aplicada, Departamento de Ciencia y Tecnología, Universidad Nacional de Quilmes, Bernal, Buenos Aires, Argentina.
Javier A IserteLaboratorio de Bioinformática Estructural, Fundación Instituto Leloir, CABA, Buenos Aires, Argentina.
Agustín I QuagliaLaboratorio de Arbovirus, Instituto de Virología ''Dr. J. M. Vanella", Facultad de Ciencias Médicas, Universidad Nacional de Córdoba, Córdoba, Argentina.
Amber SinghCenters for Diseases Control and Prevention. Fort Collins, Colorado, United States of America.
Christopher H LogueNovel and Dangerous Pathogens Training, Public Health England, Porton Down, United Kingdom.
Ann M PowersCenters for Diseases Control and Prevention. Fort Collins, Colorado, United States of America.
Marta S ContigianiLaboratorio de Arbovirus, Instituto de Virología ''Dr. J. M. Vanella", Facultad de Ciencias Médicas, Universidad Nacional de Córdoba, Córdoba, Argentina.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

St. Louis encephalitis virus (SLEV) is a re-emerging arbovirus in South America. In 2005, an encephalitis outbreak caused by SLEV was reported in Argentina. The reason for the outbreak remains unknown, but may have been related to virological factors, changes in vectors populations, avian amplifying hosts, and/or environmental conditions. The main goal of this study was to characterize the complete genome of epidemic and non-epidemic SLEV strains from Argentina. Seventeen amino acid changes were detected; ten were non-conservative and located in proteins E, NS1, NS3 and NS5. Phylogenetic analysis showed two major clades based on geography: the North America and northern Central America (NAnCA) clade and the South America and southern Central America (SAsCA) clade. Interestingly, the presence of SAsCA genotype V SLEV strains in the NAnCA clade was reported in California, Florida and Texas, overlapping with known bird migration flyways. This work represents the first step in understanding the molecular mechanisms underlying virulence and biological variation among SLEV strains.

Indexed as

Encephalitis Virus, St. LouisGenome, ViralPhylogenyAnimalsArgentinaChlorocebus aethiopsCommunicable Diseases, EmergingEncephalitis, St. LouisGenotypeHumansUnited StatesVero CellsViral ProteinsViral Proteins

Identifiers

PMID26312485
PMCPMC4552378

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.