Evidence map›Paper›PMID 26311535›Full record

ArticleScientific reports2015

Structural analysis of fungus-derived FAD glucose dehydrogenase.

Hiromi Yoshida, Genki Sakai, Kazushige Mori, Katsuhiro Kojima, Shigehiro Kamitori, Koji Sode

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 127 citations in OpenAlex.

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  9. Substrate specificity mapping of fungal CAZy AA3_2 oxidoreductases.Biotechnology for biofuels and bioproducts · 2024
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  12. Review
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  15. Electrochemical quantification of accelerated FADGDH rates in aqueous nanodroplets.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
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  18. A Tandem Solar Biofuel Cell: Harnessing Energy from Light and Biofuels.Angewandte Chemie (International ed. in English) · 2021
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  19. Early Transcriptome Response ofFrontiers in fungal biology · 2021
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  20. TargetingBiology · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Hiromi YoshidaLife Science Research Center and Faculty of Medicine, 1750-1, Ikenobe, Miki-cho, Kita-gun, Kagawa University, Kagawa 761-0793, Japan.
Genki SakaiDepartment of Biotechnology and Life Science, Graduate School of Engineering, Tokyo University of Agriculture and Technology, 2-24-16, Naka-cho, Koganei, Tokyo 184-8588, Japan.
Kazushige MoriUltizyme International Ltd., 1-13-16, Minami, Meguro, Tokyo 152-0013, Japan.
Katsuhiro KojimaUltizyme International Ltd., 1-13-16, Minami, Meguro, Tokyo 152-0013, Japan.
Shigehiro KamitoriLife Science Research Center and Faculty of Medicine, 1750-1, Ikenobe, Miki-cho, Kita-gun, Kagawa University, Kagawa 761-0793, Japan.
Koji SodeDepartment of Biotechnology and Life Science, Graduate School of Engineering, Tokyo University of Agriculture and Technology, 2-24-16, Naka-cho, Koganei, Tokyo 184-8588, Japan.
Ultizyme International (Japan) · JPKagawa University · JPTokyo University of Agriculture and Technology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We report the first three-dimensional structure of fungus-derived glucose dehydrogenase using flavin adenine dinucleotide (FAD) as the cofactor. This is currently the most advanced and popular enzyme used in glucose sensor strips manufactured for glycemic control by diabetic patients. We prepared recombinant nonglycosylated FAD-dependent glucose dehydrogenase (FADGDH) derived from Aspergillus flavus (AfGDH) and obtained the X-ray structures of the binary complex of enzyme and reduced FAD at a resolution of 1.78 Å and the ternary complex with reduced FAD and D-glucono-1,5-lactone (LGC) at a resolution of 1.57 Å. The overall structure is similar to that of fungal glucose oxidases (GOxs) reported till date. The ternary complex with reduced FAD and LGC revealed the residues recognizing the substrate. His505 and His548 were subjected for site-directed mutagenesis studies, and these two residues were revealed to form the catalytic pair, as those conserved in GOxs. The absence of residues that recognize the sixth hydroxyl group of the glucose of AfGDH, and the presence of significant cavity around the active site may account for this enzyme activity toward xylose. The structural information will contribute to the further engineering of FADGDH for use in more reliable and economical biosensing technology for diabetes management.

Indexed as

AspergillusCatalytic DomainCrystallography, X-RayFlavin-Adenine DinucleotideGluconatesGlucose 1-DehydrogenaseHistidineHydrogen BondingLactonesModels, MolecularMutagenesis, Site-DirectedOxygenSubstrate Specificitybeta-glucono-1,5-lactoneFlavin-Adenine DinucleotideGluconatesGlucose 1-DehydrogenaseHistidineLactonesOxygen

Identifiers

PMID26311535
PMCPMC4642536
OpenAlexW2220280624

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.