Evidence map›Paper›PMID 26311470›Full record

ArticleBMC genomics2015

RNAseq analysis of Aspergillus fumigatus in blood reveals a just wait and see resting stage behavior.

Henriette Irmer, Sonia Tarazona, Christoph Sasse, Patrick Olbermann, Jürgen Loeffler, Sven Krappmann, Ana Conesa, Gerhard H Braus

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 32 citations in OpenAlex.

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  6. Assessing Differences between Clinical Isolates ofPathogens (Basel, Switzerland) · 2022
    Article
  7. Frontiers in microbiology · 2021
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  15. Iron acquisition in fungal pathogens of humans.Metallomics : integrated biometal science · 2017
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Henriette IrmerInstitut für Mikrobiologie und Genetik, Georg-August-Universität Göttingen, Grisebachstraße 8, D-37077, Göttingen, Germany. hirmer@gwdg.de.
Sonia TarazonaGenomics of Gene Expression Lab, Prince Felipe Research Center, Av. Eduardo Primo Yufera 3, 46012, Valencia, Spain. starazona@cipf.es.
Christoph SasseInstitut für Mikrobiologie und Genetik, Georg-August-Universität Göttingen, Grisebachstraße 8, D-37077, Göttingen, Germany. csasse1@gwdg.de.
Patrick OlbermannResearch Center for Infectious Diseases, Julius-Maximilians University Würzburg, Würzburg, Germany. patrick.olbermann@gmx.de.
Jürgen LoefflerLaboratory WÜ4i, Medical Clinic and Policlinic II, University Clinic Würzburg, Würzburg, Germany. Loeffler_J@ukw.de.
Sven KrappmannResearch Center for Infectious Diseases, Julius-Maximilians University Würzburg, Würzburg, Germany. sven.krappmann@uk-erlangen.de.
Ana ConesaGenomics of Gene Expression Lab, Prince Felipe Research Center, Av. Eduardo Primo Yufera 3, 46012, Valencia, Spain. aconesa@cipf.es.
Gerhard H BrausInstitut für Mikrobiologie und Genetik, Georg-August-Universität Göttingen, Grisebachstraße 8, D-37077, Göttingen, Germany. gbraus@gwdg.de.
University of Göttingen · DEUniversity of Würzburg · DECentro de Investigacion Principe Felipe · ESUniversity of Florida · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundInvasive aspergillosis is started after germination of Aspergillus fumigatus conidia that are inhaled by susceptible individuals. Fungal hyphae can grow in the lung through the epithelial tissue and disseminate hematogenously to invade into other organs. Low fungaemia indicates that fungal elements do not reside in the bloodstream for long.

resultsWe analyzed whether blood represents a hostile environment to which the physiology of A. fumigatus has to adapt. An in vitro model of A. fumigatus infection was established by incubating mycelium in blood. Our model allowed to discern the changes of the gene expression profile of A. fumigatus at various stages of the infection. The majority of described virulence factors that are connected to pulmonary infections appeared not to be activated during the blood phase. Three active processes were identified that presumably help the fungus to survive the blood environment in an advanced phase of the infection: iron homeostasis, secondary metabolism, and the formation of detoxifying enzymes.

conclusionsWe propose that A. fumigatus is hardly able to propagate in blood. After an early stage of sensing the environment, virtually all uptake mechanisms and energy-consuming metabolic pathways are shut-down. The fungus appears to adapt by trans-differentiation into a resting mycelial stage. This might reflect the harsh conditions in blood where A. fumigatus cannot take up sufficient nutrients to establish self-defense mechanisms combined with significant growth.

Indexed as

FungemiaAspergillosisAspergillus fumigatusBiological TransportCell CycleEnergy MetabolismGene Expression ProfilingGene Expression Regulation, FungalHumansRNA, FungalSequence Analysis, RNATime FactorsTranscriptomeVirulenceRNA, Fungal

Identifiers

PMID26311470
PMCPMC4551469
OpenAlexW2140153053

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.