Evidence map›Paper›PMID 26310293›Full record

ArticleHuman mutation2015

Defects in tRNA Anticodon Loop 2'-O-Methylation Are Implicated in Nonsyndromic X-Linked Intellectual Disability due to Mutations in FTSJ1.

Michael P Guy, Marie Shaw, Catherine L Weiner, Lynne Hobson, Zornitza Stark, Katherine Rose, Vera M Kalscheuer, Jozef Gecz, Eric M Phizicky

Open access · greenAbstract read
In one paragraph

Article in Human mutation, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 93 papers.

0numbers the graph read from it
0cells of the map it votes in
93citing papers in PubMed
6.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

93 citing papers in PubMed, 144 citations in OpenAlex.

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  11. Pathogenic mechanism and therapeutic intervention of impaired NProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  12. Review
  13. Review
  14. Article
  15. RNA modifying enzymes shape tRNA biogenesis and function.The Journal of biological chemistry · 2024
    Review
  16. Article
  17. 2'-RNA (New York, N.Y.) · 2024
    Review
  18. Article
  19. Review
  20. Article

33 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 3 countries.

Michael P GuyDepartment of Biochemistry and Biophysics, University of Rochester School of Medicine, Rochester, New York, 14642.
Marie ShawRobinson Research Institute, The University of Adelaide, Adelaide, South Australia 5000, Australia.
Catherine L WeinerDepartment of Biochemistry and Biophysics, University of Rochester School of Medicine, Rochester, New York, 14642.
Lynne HobsonSA Pathology, Women's and Children's Hospital, Adelaide, South Australia 5006, Australia.
Zornitza StarkVictorian Clinical Genetics Services, Murdoch Children's Research Institute, Parkville, Victoria 3052, Australia.
Katherine RoseMonash Health, Special Medicine Centre, Monash Medical Centre, Clayton, Victoria 3168, Australia.
Vera M KalscheuerDepartment Human Molecular Genetics, Max Planck Institute for Molecular Genetics, Berlin D14195, Germany.
Jozef GeczRobinson Research Institute, The University of Adelaide, Adelaide, South Australia 5000, Australia.
Eric M PhizickyDepartment of Biochemistry and Biophysics, University of Rochester School of Medicine, Rochester, New York, 14642.
University of Rochester · USUniversity of Adelaide · AUMax Planck Society · DEMonash Medical Centre · AUSouth Australia Pathology · AUVictorian Clinical Genetics Services · AU

Funding

TRNA SPLICINGR01GM052347 · NIGMS · UNIVERSITY OF ROCHESTER · PI Eric M. Phizicky · 1995 to 2026
$9.6M
NIGMS NIH HHS GM052347NIGMS NIH HHS R01 GM052347
6 · The paper itself

Abstract

tRNA modifications are crucial for efficient and accurate protein synthesis, and modification defects are frequently associated with disease. Yeast trm7Δ mutants grow poorly due to lack of 2'-O-methylated C32 (Cm32 ) and Gm34 on tRNA(Phe) , catalyzed by Trm7-Trm732 and Trm7-Trm734, respectively, which in turn results in loss of wybutosine at G37 . Mutations in human FTSJ1, the likely TRM7 homolog, cause nonsyndromic X-linked intellectual disability (NSXLID), but the role of FTSJ1 in tRNA modification is unknown. Here, we report that tRNA(Phe) from two genetically independent cell lines of NSXLID patients with loss-of-function FTSJ1 mutations nearly completely lacks Cm32 and Gm34 , and has reduced peroxywybutosine (o2yW37 ). Additionally, tRNA(Phe) from an NSXLID patient with a novel FTSJ1-p.A26P missense allele specifically lacks Gm34 , but has normal levels of Cm32 and o2yW37 . tRNA(Phe) from the corresponding Saccharomyces cerevisiae trm7-A26P mutant also specifically lacks Gm34 , and the reduced Gm34 is not due to weaker Trm734 binding. These results directly link defective 2'-O-methylation of the tRNA anticodon loop to FTSJ1 mutations, suggest that the modification defects cause NSXLID, and may implicate Gm34 of tRNA(Phe) as the critical modification. These results also underscore the widespread conservation of the circuitry for Trm7-dependent anticodon loop modification of eukaryotic tRNA(Phe) .

Indexed as

AnticodonMutationAllelesAmino Acid SequenceAmino Acid SubstitutionCell LineCodonFemaleGene ExpressionGenotypeHumansMaleMethylationMethyltransferasesModels, MolecularNuclear ProteinsAnticodonCodonFTSJ1 protein, humanMethyltransferasesNuclear ProteinsRNA, TransferRNA, Transfer, Phe2′-O-methylationFTSJ1intellectual disabilityNSXLIDTRM7tRNA

Identifiers

PMID26310293
PMCPMC4643400
OpenAlexW1935366897

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.