Evidence map›Paper›PMID 26309257›Full record

ArticleThe Journal of biological chemistry2015

Snf1 Phosphorylates Adenylate Cyclase and Negatively Regulates Protein Kinase A-dependent Transcription in Saccharomyces cerevisiae.

Raffaele Nicastro, Farida Tripodi, Marco Gaggini, Andrea Castoldi, Veronica Reghellin, Simona Nonnis, Gabriella Tedeschi, Paola Coccetti

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 76 citations in OpenAlex.

  1. Article
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  7. Article
  8. Review
  9. Advances inJournal of fungi (Basel, Switzerland) · 2023
    Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Quiescence inAnnual review of genetics · 2022
    Review
  17. Article
  18. Article
  19. D-Xylose Sensing inInternational journal of molecular sciences · 2021
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Raffaele NicastroFrom the Department of Biotechnology and Biosciences, University of Milano-Bicocca, 20126 Milan, Italy, SYSBIO, Centre of Systems Biology, 20126 Milan, Italy.
Farida TripodiFrom the Department of Biotechnology and Biosciences, University of Milano-Bicocca, 20126 Milan, Italy, SYSBIO, Centre of Systems Biology, 20126 Milan, Italy.
Marco GagginiFrom the Department of Biotechnology and Biosciences, University of Milano-Bicocca, 20126 Milan, Italy, SYSBIO, Centre of Systems Biology, 20126 Milan, Italy.
Andrea CastoldiFrom the Department of Biotechnology and Biosciences, University of Milano-Bicocca, 20126 Milan, Italy, SYSBIO, Centre of Systems Biology, 20126 Milan, Italy.
Veronica ReghellinFrom the Department of Biotechnology and Biosciences, University of Milano-Bicocca, 20126 Milan, Italy, SYSBIO, Centre of Systems Biology, 20126 Milan, Italy.
Simona NonnisDipartimento di Patologia Animale, Igiene e Sanità Pubblica Veterinaria-Biochemistry, University of Milano, 20133 Milan, Italy, and the Filarete Foundation, 20139 Milan, Italy.
Gabriella TedeschiDipartimento di Patologia Animale, Igiene e Sanità Pubblica Veterinaria-Biochemistry, University of Milano, 20133 Milan, Italy, and the Filarete Foundation, 20139 Milan, Italy.
Paola CoccettiFrom the Department of Biotechnology and Biosciences, University of Milano-Bicocca, 20126 Milan, Italy, SYSBIO, Centre of Systems Biology, 20126 Milan, Italy, paola.coccetti@unimib.it.
University of Milano-Bicocca · ITFondazione Filarete · ITUniversity of Milan · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In eukaryotes, nutrient availability and metabolism are coordinated by sensing mechanisms and signaling pathways, which influence a broad set of cellular functions such as transcription and metabolic pathways to match environmental conditions. In yeast, PKA is activated in the presence of high glucose concentrations, favoring fast nutrient utilization, shutting down stress responses, and boosting growth. On the contrary, Snf1/AMPK is activated in the presence of low glucose or alternative carbon sources, thus promoting an energy saving program through transcriptional activation and phosphorylation of metabolic enzymes. The PKA and Snf1/AMPK pathways share common downstream targets. Moreover, PKA has been reported to negatively influence the activation of Snf1/AMPK. We report a new cross-talk mechanism with a Snf1-dependent regulation of the PKA pathway. We show that Snf1 and adenylate cyclase (Cyr1) interact in a nutrient-independent manner. Moreover, we identify Cyr1 as a Snf1 substrate and show that Snf1 activation state influences Cyr1 phosphorylation pattern, cAMP intracellular levels, and PKA-dependent transcription.

Indexed as

Transcription, GeneticAMP-Activated Protein KinasesBiocatalysisCyclic AMP-Dependent Protein KinasesEnzyme ActivationGene Expression Regulation, FungalGlucoseMitochondrial ProteinsMutationPhenotypePhosphorylationProtein Serine-Threonine KinasesProtein Structure, TertiarySaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAMP-Activated Protein KinasesCyclic AMP-Dependent Protein KinasesGlucoseMitochondrial ProteinsProtein Serine-Threonine KinasesRRF1 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsSNF1-related protein kinasesadenylate cyclase (adenylyl cyclase)AMP-activated kinase (AMPK)cyclic AMP (cAMP)Cyr1protein kinase A (PKA)yeast

Identifiers

PMID26309257
PMCPMC4598984
OpenAlexW1717375378

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.