Evidence map›Paper›PMID 26308899›Full record

ArticleNature2015

GGGGCC repeat expansion in C9orf72 compromises nucleocytoplasmic transport.

Brian D Freibaum, Yubing Lu, Rodrigo Lopez-Gonzalez, Nam Chul Kim, Sandra Almeida, Kyung-Ha Lee, Nisha Badders, Marc Valentine, Bruce L Miller, Philip C Wong and 4 more

Abstract read
In one paragraph

Article in Nature, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 547 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
547citing papers in PubMed, 1 pooled it
66.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

547 citing papers in PubMed, 1 synthesis or guideline pooled it, 860 citations in OpenAlex.

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487 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 1 country.

Brian D FreibaumDepartment of Cell and Molecular Biology, St Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.
Yubing LuDepartment of Neurology, University of Massachusetts Medical School, Worcester, Massachusetts 01605, USA.
Rodrigo Lopez-GonzalezDepartment of Neurology, University of Massachusetts Medical School, Worcester, Massachusetts 01605, USA.
Nam Chul KimDepartment of Cell and Molecular Biology, St Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.
Sandra AlmeidaDepartment of Neurology, University of Massachusetts Medical School, Worcester, Massachusetts 01605, USA.
Kyung-Ha LeeDepartment of Cell and Molecular Biology, St Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.
Nisha BaddersDepartment of Cell and Molecular Biology, St Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.
Marc ValentineDepartment of Cell and Molecular Biology, St Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.
Bruce L MillerMemory and Aging Center, Department of Neurology, University of California San Francisco, San Francisco, California 94158, USA.
Philip C WongDepartment of Pathology, The Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA.
Leonard PetrucelliDepartment of Neuroscience, Mayo Clinic Florida, Jacksonville, Florida 32224, USA.
Hong Joo KimDepartment of Cell and Molecular Biology, St Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.
Fen-Biao GaoDepartment of Neurology, University of Massachusetts Medical School, Worcester, Massachusetts 01605, USA.
J Paul TaylorHoward Hughes Medical Institute, Department of Cell and Molecular Biology, St Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.
St. Jude Children's Research Hospital · USUniversity of Massachusetts Chan Medical School · USJacksonville College · USJohns Hopkins University · USUniversity of California, San Francisco · US

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
TDP-43 Loss-of-Function: Biology to BiomarkersP01AG019724 · NIA · UNIVERSITY OF PENNSYLVANIA · PI Jennifer Merrilees · 2002 to 2026
$67.2M
'T V ASSESSMENT - MEMORY DISORDERED PATIENTS'P50AG005146 · NIA · JOHNS HOPKINS UNIVERSITY · PI HUGANIR, RICHARD L · 1985 to 2019
$37.6M
Investigating Common Molecular Pathogenic Pathways in Frontotemporal Dementia Patients iPSC-Derived NeuronsR01NS057553 · NINDS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI Fen-Biao Gao · 2008 to 2026
$4.5M
Frontotemporal Dementia Induced Pluripotent Stem Cell ConsortiumR01NS079725 · NINDS · J. DAVID GLADSTONE INSTITUTES · PI GAO, FEN-BIAO, HUANG, YADONG · 2013 to 2016
$3.1M
Howard Hughes Medical InstituteNCI NIH HHS P30 CA021765NIA NIH HHS AG019724NIA NIH HHS P01 AG019724NIA NIH HHS P50 AG005146NINDS NIH HHS NS079725NINDS NIH HHS R01 NS057553NINDS NIH HHS R01 NS079725PHS HHS N079725
6 · The paper itself

Abstract

The GGGGCC (G4C2) repeat expansion in a noncoding region of C9orf72 is the most common cause of sporadic and familial forms of amyotrophic lateral sclerosis and frontotemporal dementia. The basis for pathogenesis is unknown. To elucidate the consequences of G4C2 repeat expansion in a tractable genetic system, we generated transgenic fly lines expressing 8, 28 or 58 G4C2-repeat-containing transcripts that do not have a translation start site (AUG) but contain an open-reading frame for green fluorescent protein to detect repeat-associated non-AUG (RAN) translation. We show that these transgenic animals display dosage-dependent, repeat-length-dependent degeneration in neuronal tissues and RAN translation of dipeptide repeat (DPR) proteins, as observed in patients with C9orf72-related disease. This model was used in a large-scale, unbiased genetic screen, ultimately leading to the identification of 18 genetic modifiers that encode components of the nuclear pore complex (NPC), as well as the machinery that coordinates the export of nuclear RNA and the import of nuclear proteins. Consistent with these results, we found morphological abnormalities in the architecture of the nuclear envelope in cells expressing expanded G4C2 repeats in vitro and in vivo. Moreover, we identified a substantial defect in RNA export resulting in retention of RNA in the nuclei of Drosophila cells expressing expanded G4C2 repeats and also in mammalian cells, including aged induced pluripotent stem-cell-derived neurons from patients with C9orf72-related disease. These studies show that a primary consequence of G4C2 repeat expansion is the compromise of nucleocytoplasmic transport through the nuclear pore, revealing a novel mechanism of neurodegeneration.

Indexed as

Active Transport, Cell NucleusAmyotrophic Lateral SclerosisAnimalsAnimals, Genetically ModifiedC9orf72 ProteinDNA Repeat ExpansionDrosophila melanogasterEyeFemaleFrontotemporal DementiaHeLa CellsHumansInduced Pluripotent Stem CellsMaleMusclesNeuronsC9orf72 ProteinC9orf72 protein, humanProteinsRNA

Identifiers

PMID26308899
PMCPMC4631399
OpenAlexW1796096082

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.