Evidence map›Paper›PMID 26307379›Full record

ArticleThe Plant cell2015

The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling.

Yu Zhao, Saifeng Cheng, Yaling Song, Yulan Huang, Shaoli Zhou, Xiaoyun Liu, Dao-Xiu Zhou

Open access · greenAbstract read
In one paragraph

Article in The Plant cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 117 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
117citing papers in PubMed, 2 pooled it
17.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

117 citing papers in PubMed, 2 syntheses or guidelines pooled it, 251 citations in OpenAlex.

  1. Pooled it
  2. Pinpointing genomic regions associated with root system architecture in rice through an integrative meta-analysis approach.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Pooled it
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  7. Genome-Wide Analysis ofPlants (Basel, Switzerland) · 2026
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57 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Yu ZhaoNational Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, 430070 Wuhan, China zhaoyu@mail.hzau.edu.cn.ORCID http://orcid.org/0000-0003-4451-9907
Saifeng ChengNational Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, 430070 Wuhan, China.ORCID http://orcid.org/0000-0003-2712-3521
Yaling SongNational Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, 430070 Wuhan, China.
Yulan HuangNational Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, 430070 Wuhan, China.
Shaoli ZhouNational Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, 430070 Wuhan, China.ORCID http://orcid.org/0000-0001-9111-1598
Xiaoyun LiuNational Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, 430070 Wuhan, China.ORCID http://orcid.org/0000-0002-5740-9777
Dao-Xiu ZhouNational Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, 430070 Wuhan, China Institute of Plant Sciences Paris-Saclay (IPS2), Université Paris-Sud 11, 91405 Orsay, France.ORCID http://orcid.org/0000-0002-1540-0598
Huazhong Agricultural University · CNUniversité Paris-Sud · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Crown roots are the main components of the fibrous root system in rice (Oryza sativa). WOX11, a WUSCHEL-related homeobox gene specifically expressed in the emerging crown root meristem, is a key regulator in crown root development. However, the nature of WOX11 function in crown root development has remained elusive. Here, we identified a rice AP2/ERF protein, ERF3, which interacts with WOX11 and was expressed in crown root initials and during crown root growth. Functional analysis revealed that ERF3 was essential for crown root development and acts in auxin- and cytokinin-responsive gene expression. Downregulation of ERF3 in wox11 mutants produced a more severe root phenotype. Also, increased expression of ERF3 could partially complement wox11, indicating that the two genes functioned cooperatively to regulate crown root development. ERF3 and WOX11 shared a common target, the cytokinin-responsive gene RR2. The expression of ERF3 and WOX11 only partially overlapped, underlining a spatio-temporal control of RR2 expression and crown root development. Furthermore, ERF3-regulated RR2 expression was involved in crown root initiation, while the ERF3/WOX11 interaction likely repressed RR2 during crown root elongation. These results define a mechanism regulating gene expression involved in cytokinin signaling during different stages of crown root development in rice.

Indexed as

CytokininsGene Expression Regulation, PlantGene Knockdown TechniquesHomeodomain ProteinsIndoleacetic AcidsMolecular Sequence DataMutationOryzaPlant ProteinsPlant RootsPlants, Genetically ModifiedSignal TransductionCytokininsHomeodomain ProteinsIndoleacetic AcidsPlant Proteins

Identifiers

PMID26307379
PMCPMC4815106
OpenAlexW2135208298

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.