Evidence map›Paper›PMID 26307378›Full record

ArticleThe Plant cell2015

HIGH CHLOROPHYLL FLUORESCENCE145 Binds to and Stabilizes the psaA 5' UTR via a Newly Defined Repeat Motif in Embryophyta.

Nikolay Manavski, Salar Torabi, Lina Lezhneva, Muhammad Asif Arif, Wolfgang Frank, Jörg Meurer

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Review
  3. International journal of molecular sciences · 2023
    Article
  4. The plant cytosolic mPlant communications · 2023
    Article
  5. Article
  6. Review
  7. Article
  8. Screening and Identification of Candidate GUN1-Interacting Proteins inInternational journal of molecular sciences · 2021
    Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Review
  17. Auxin transport and conjugation caught together.Journal of experimental botany · 2017
    Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Nikolay ManavskiBiozentrum der LMU München, Department Biologie I, 82152 Planegg-Martinsried, Germany.ORCID http://orcid.org/0000-0003-2740-5991
Salar TorabiBiozentrum der LMU München, Department Biologie I, 82152 Planegg-Martinsried, Germany.
Lina LezhnevaBiozentrum der LMU München, Department Biologie I, 82152 Planegg-Martinsried, Germany.
Muhammad Asif ArifBiozentrum der LMU München, Department Biologie I, 82152 Planegg-Martinsried, Germany.
Wolfgang FrankBiozentrum der LMU München, Department Biologie I, 82152 Planegg-Martinsried, Germany.
Jörg MeurerBiozentrum der LMU München, Department Biologie I, 82152 Planegg-Martinsried, Germany meurer@bio.lmu.de.ORCID http://orcid.org/0000-0003-2973-9514
Urologische Klinik München · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The seedling-lethal Arabidopsis thaliana high chlorophyll fluorescence145 (hcf145) mutation leads to reduced stability of the plastid tricistronic psaA-psaB-rps14 mRNA and photosystem I (PSI) deficiency. Here, we genetically mapped the HCF145 gene, which encodes a plant-specific, chloroplast-localized, modular protein containing two homologous domains related to the polyketide cyclase family comprising 37 annotated Arabidopsis proteins of unknown function. Two further highly conserved and previously uncharacterized tandem repeat motifs at the C terminus, herein designated the transcript binding motif repeat (TMR) domains, confer sequence-specific RNA binding capability to HCF145. Homologous TMR motifs are often found as multiple repeats in quite diverse proteins of green and red algae and in the cyanobacterium Microcoleus sp PCC 7113 with unknown function. HCF145 represents the only TMR protein found in vascular plants. Detailed analysis of hcf145 mutants in Arabidopsis and Physcomitrella patens as well as in vivo and in vitro RNA binding assays indicate that HCF145 has been recruited in embryophyta for the stabilization of the psaA-psaB-rps14 mRNA via specific binding to its 5' untranslated region. The polyketide cyclase-related motifs support association of the TMRs to the psaA RNA, presumably pointing to a regulatory role in adjusting PSI levels according to the requirements of the plant cell.

Indexed as

5' Untranslated RegionsAmino Acid MotifsAllelesArabidopsisArabidopsis ProteinsBryophytaChloroplastsEmbryophytaGenetic Complementation TestMutationNuclear ProteinsPhotosystem I Protein ComplexPlants, Genetically ModifiedProtein BiosynthesisRepetitive Sequences, Amino AcidRibosomal Proteins5' Untranslated RegionsArabidopsis ProteinsHCF145 protein, ArabidopsisNuclear ProteinsPhotosystem I Protein Complexphotosystem I, psaB subunitRibosomal Proteinsribosomal protein S14

Identifiers

PMID26307378
PMCPMC4815088
OpenAlexW1885394943

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.