Evidence map›Paper›PMID 26307377›Full record

ArticleThe Plant cell2015

Global Transcriptome Profiling of Developing Leaf and Shoot Apices Reveals Distinct Genetic and Environmental Control of Floral Transition and Inflorescence Development in Barley.

Benedikt Digel, Artem Pankin, Maria von Korff

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
9.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 112 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Benedikt DigelMax Planck Institute for Plant Breeding Research, D-50829 Cologne, Germany Institute of Plant Genetics, Heinrich-Heine-University, 40225 Düsseldorf, Germany Cluster of Excellence on Plant Sciences, "From Complex Traits towards Synthetic Modules," 40225 Düsseldorf, Germany.ORCID http://orcid.org/0000-0002-2003-2208
Artem PankinMax Planck Institute for Plant Breeding Research, D-50829 Cologne, Germany Institute of Plant Genetics, Heinrich-Heine-University, 40225 Düsseldorf, Germany.ORCID http://orcid.org/0000-0002-1149-9746
Maria von KorffMax Planck Institute for Plant Breeding Research, D-50829 Cologne, Germany Institute of Plant Genetics, Heinrich-Heine-University, 40225 Düsseldorf, Germany Cluster of Excellence on Plant Sciences, "From Complex Traits towards Synthetic Modules," 40225 Düsseldorf, Germany korff@mpipz.mpg.de.ORCID http://orcid.org/0000-0002-6816-586X
Cluster of Excellence on Plant Sciences · DEMax Planck Institute for Plant Breeding Research · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Timing of the floral transition and inflorescence development strongly affect yield in barley (Hordeum vulgare). Therefore, we examined the effects of daylength and the photoperiod response gene PHOTOPERIOD1 (Ppd-H1) on barley development and analyzed gene expression changes in the developing leaves and main shoot apices (MSAs) of barley by RNA sequencing. The daylength sensitivity of MSA development had two phases, floret primordia initiated under long and short days, whereas successful inflorescence development occurred only under long days. The transcripts associated with floral transition were largely regulated independently of photoperiod and allelic variation at Ppd-H1. The photoperiod- and Ppd-H1-dependent differences in inflorescence development and flower fertility were associated with the induction of barley FLOWERING LOCUS T orthologs: FT1 in leaves and FT2 in MSAs. FT1 expression was coregulated with transcripts involved in nutrient transport, carbohydrate metabolism, and cell cycle regulation, suggesting that FT1 might alter source-sink relationships. Successful inflorescence development correlated with upregulation of FT2 and transcripts related to floral organ development, phytohormones, and cell cycle regulation. Identification of photoperiod and stage-specific transcripts gives insights into the regulation of reproductive development in barley and provides a resource for investigation of the complexities of development and yield in temperate grasses.

Indexed as

FlowersGene Expression Regulation, PlantGenetic VariationHordeumInflorescencePhotoperiodPlant LeavesPlant ProteinsPlant ShootsTranscriptomePlant Proteins

Identifiers

PMID26307377
PMCPMC4815099
OpenAlexW2169911909

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.