Evidence map›Paper›PMID 26307166›Full record

ArticlemBio2015

Discovery of a Novel Hepatovirus (Phopivirus of Seals) Related to Human Hepatitis A Virus.

S J Anthony, J A St Leger, E Liang, A L Hicks, M D Sanchez-Leon, K Jain, J H Lefkowitch, I Navarrete-Macias, N Knowles, T Goldstein and 4 more

Open access · goldAbstract read
In one paragraph

Article in mBio, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 61 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Viral metagenomic survey of Caspian seals.Frontiers in veterinary science · 2024
    Article
  9. Article
  10. Article
  11. Hepatitis A virus infection.Nature reviews. Disease primers · 2023
    Review
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 8 institutions in 2 countries.

S J AnthonyCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, USA Department of Epidemiology, Mailman School of Public Health, Columbia University, New York, New York, USA EcoHealth Alliance, New York, New York, USA sja2127@cumc.columbia.edu.
J A St LegerDepartment of Pathology and Research, SeaWorld Parks, San Diego, California, USA.
E LiangCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, USA EcoHealth Alliance, New York, New York, USA.
A L HicksCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, USA.
M D Sanchez-LeonCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, USA.
K JainCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, USA.
J H LefkowitchDepartment of Pathology and Cell Biology, College of Physicians and Surgeons, Columbia University, New York, New York, USA.
I Navarrete-MaciasCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, USA.
N KnowlesThe Pirbright Institute, Pirbright, United Kingdom.
T GoldsteinOne Health Institute & Wildlife Health Center, School of Veterinary Medicine, University of California Davis, Davis, California, USA.
K PugliaresNew England Aquarium, Marine Animal Rescue and Rehabilitation Department, Boston, Massachusetts, USA.
H S IpUnited States Geological Survey National Wildlife Health Center, Madison, Wisconsin, USA.ORCID http://orcid.org/0000-0003-4844-7533
T RowlesNational Oceanic and Atmospheric Administration, Silver Spring, Maryland, USA.
W I LipkinCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, USA Department of Epidemiology, Mailman School of Public Health, Columbia University, New York, New York, USA.
Columbia University · USEcoHealth Alliance · USNational Oceanic and Atmospheric Administration · USNew England Aquarium · USSeaWorld Entertainment · USThe Pirbright Institute · GBUnited States Geological Survey · USUniversity of California, Davis · US

Funding

Translational CoreU19AI109761 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI BARIC, RALPH S · 2014 to 2018
$32.6M
Biotechnology and Biological Sciences Research CouncilNIAID NIH HHS U19 AI109761NIAID NIH HHS U19AI109761PHS HHS NA07NMF4390220AND
6 · The paper itself

Abstract

unlabelledDescribing the viral diversity of wildlife can provide interesting and useful insights into the natural history of established human pathogens. In this study, we describe a previously unknown picornavirus in harbor seals (tentatively named phopivirus) that is related to human hepatitis A virus (HAV). We show that phopivirus shares several genetic and phenotypic characteristics with HAV, including phylogenetic relatedness across the genome, a specific and seemingly quiescent tropism for hepatocytes, structural conservation in a key functional region of the type III internal ribosomal entry site (IRES), and a codon usage bias consistent with that of HAV. IMPORTANCE: Hepatitis A virus (HAV) is an important viral hepatitis in humans because of the substantial number of cases each year in regions with low socioeconomic status. The origin of HAV is unknown, and no nonprimate HAV-like viruses have been described. Here, we describe the discovery of an HAV-like virus in seals. This finding suggests that the diversity and evolutionary history of these viruses might be far greater than previously thought and may provide insight into the origin and pathogenicity of HAV.

Indexed as

PhylogenyAnimalsCodonGenome, ViralGenotypeHepatitis A Virus, HumanHepatovirusHigh-Throughput Nucleotide SequencingHumansLiverLungReal-Time Polymerase Chain ReactionRNA, ViralSeals, EarlessSpleenVirus ReplicationCodonRNA, Viral

Identifiers

PMID26307166
PMCPMC4550696
OpenAlexW2123319650

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.