ArticleNeuroinformatics2016
TReMAP: Automatic 3D Neuron Reconstruction Based on Tracing, Reverse Mapping and Assembling of 2D Projections.
Article in Neuroinformatics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
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Who cites it
26 citing papers in PubMed.
- Article
- Multimodal characterization of variation in neuronal types in the mouse basal ganglia.bioRxiv : the preprint server for biology · 2026Article
- Human Neocortical Glutamatergic Neurons Revealed Through Multimodal Profiling.bioRxiv : the preprint server for biology · 2026Article
- Connecto-informatics at the mesoscale: current advances in image processing and analysis for mapping the brain connectivity.Brain informatics · 2024Review
- DNeuroMAT: A Deep-Learning-Based Neuron Morphology Analysis Toolbox.Methods in molecular biology (Clifton, N.J.) · 2024Article
- Connecting single-cell transcriptomes to projectomes in mouse visual cortex.bioRxiv : the preprint server for biology · 2023Article
- Morphoelectric and transcriptomic divergence of the layer 1 interneuron repertoire in human versus mouse neocortex.Science (New York, N.Y.) · 2023Article
- BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets.Nature methods · 2023Article
- Tracing weak neuron fibers.Bioinformatics (Oxford, England) · 2023Article
- Neuron tracing from light microscopy images: automation, deep learning and bench testing.Bioinformatics (Oxford, England) · 2022Review
- NeuroConstruct: 3D Reconstruction and Visualization of Neurites in Optical Microscopy Brain Images.IEEE transactions on visualization and computer graphics · 2022Article
- Smart imaging to empower brain-wide neuroscience at single-cell levels.Brain informatics · 2022Review
- Article
- Scaled, high fidelity electrophysiological, morphological, and transcriptomic cell characterization.eLife · 2021Article
- Article
- Neuronize v2: Bridging the Gap Between Existing Proprietary Tools to Optimize Neuroscientific Workflows.Frontiers in neuroanatomy · 2020Article
- Classification of electrophysiological and morphological neuron types in the mouse visual cortex.Nature neuroscience · 2019Article
- Automated Neuron Reconstruction from 3D Fluorescence Microscopy Images Using Sequential Monte Carlo Estimation.Neuroinformatics · 2019Article
- New Features for Neuron Classification.Neuroinformatics · 2019Article
- Large-scale Exploration of Neuronal Morphologies Using Deep Learning and Augmented Reality.Neuroinformatics · 2018Article
Corrections and comments
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Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Efficient and accurate digital reconstruction of neurons from large-scale 3D microscopic images remains a challenge in neuroscience. We propose a new automatic 3D neuron reconstruction algorithm, TReMAP, which utilizes 3D Virtual Finger (a reverse-mapping technique) to detect 3D neuron structures based on tracing results on 2D projection planes. Our fully automatic tracing strategy achieves close performance with the state-of-the-art neuron tracing algorithms, with the crucial advantage of efficient computation (much less memory consumption and parallel computation) for large-scale images.
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Registered trials
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