Evidence map›Paper›PMID 26306392›Full record

ArticleMicrobiome2015

Structure and function of the healthy pre-adolescent pediatric gut microbiome.

Emily B Hollister, Kevin Riehle, Ruth Ann Luna, Erica M Weidler, Michelle Rubio-Gonzales, Toni-Ann Mistretta, Sabeen Raza, Harsha V Doddapaneni, Ginger A Metcalf, Donna M Muzny and 4 more

Open access · goldAbstract read
In one paragraph

Article in Microbiome, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 227 papers, 7 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
227citing papers in PubMed, 7 pooled it
11.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

227 citing papers in PubMed, 7 syntheses or guidelines pooled it, 403 citations in OpenAlex.

  1. Pooled it
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  3. Diet, adiposity, and the gut microbiota from infancy to adolescence: A systematic review.Obesity reviews : an official journal of the International Association for the Study of Obesity · 2021
    Pooled it
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  7. The gut microbiome, symptoms, and targeted interventions in children with cancer: a systematic review.Supportive care in cancer : official journal of the Multinational Association of Supportive Care in Cancer · 2018
    Pooled it
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  11. Gut Microbiome Composition Predicts Infection Risk During Chemotherapy in Children With Acute Lymphoblastic Leukemia.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2018
    Trial
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167 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Emily B HollisterDepartment of Pathology & Immunology, Baylor College of Medicine, Houston, TX, USA. holliste@bcm.edu.
Kevin RiehleDepartment of Molecular & Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Ruth Ann LunaDepartment of Pathology & Immunology, Baylor College of Medicine, Houston, TX, USA.
Erica M WeidlerDepartment of Pediatrics, Baylor College of Medicine, Houston, TX, USA.
Michelle Rubio-GonzalesDepartment of Pathology & Immunology, Baylor College of Medicine, Houston, TX, USA.
Toni-Ann MistrettaDepartment of Pathology & Immunology, Baylor College of Medicine, Houston, TX, USA.
Sabeen RazaDepartment of Pathology & Immunology, Baylor College of Medicine, Houston, TX, USA.
Harsha V DoddapaneniHuman Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA.
Ginger A MetcalfHuman Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA.
Donna M MuznyHuman Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA.
Richard A GibbsHuman Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA.
Joseph F PetrosinoDepartment of Molecular Virology & Microbiology, Baylor College of Medicine, Houston, TX, USA.
Robert J ShulmanDepartment of Pediatrics, Baylor College of Medicine, Houston, TX, USA.
James VersalovicDepartment of Pathology & Immunology, Baylor College of Medicine, Houston, TX, USA.
Baylor College of Medicine · USTexas Children's Hospital · US

Funding

Tissue Analysis & Molecular Imaging CoreP30DK056338 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI Geoffrey A Preidis · 2001 to 2026
$28.3M
PATHWAYS TO NEW BIOMARKERS IN RECURRENT ABDOMINAL PAIN IN CHILDRENR01NR013497 · NINR · BAYLOR COLLEGE OF MEDICINE · PI SAVIDGE, TOR C. · 2012 to 2024
$4.7M
Recurrent Abdominal Pain in ChildrenR01NR005337 · NINR · BAYLOR COLLEGE OF MEDICINE · PI SHULMAN, ROBERT J · 2002 to 2012
$4.3M
The Human Microbiome in Pediatric Abdominal Pain and Intestinal InflammationUH3DK083990 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI VERSALOVIC, JAMES · 2010 to 2012
$3.3M
Gut L-Histidine Metabolism and Histamine Signaling in Colonic NeoplasiaU01CA170930 · NCI · BAYLOR COLLEGE OF MEDICINE · PI VERSALOVIC, JAMES · 2013 to 2017
$2.8M
A Microbial Genome Reference Platform for MetagenomicsU54HG004973 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI GIBBS, RICHARD A, HIGHLANDER, SARAH KATHERINE · 2009 to 2010
$1.8M
Modulation of NF-kB Signaling by ImmunoprobioticsR01AT004326 · NCCIH · BAYLOR COLLEGE OF MEDICINE · PI VERSALOVIC, JAMES · 2008 to 2011
$1.8M
The Human Microbiome in Pediatric Abdominal Pain and Intestinal InflammationUH2DK083990 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI VERSALOVIC, JAMES · 2009 to 2009
$755k
NCCIH NIH HHS R01 AT004326NCI NIH HHS U01 CA170930NHGRI NIH HHS U54 HG004973NIDDK NIH HHS P30 DK056338NIDDK NIH HHS UH2 DK083990NIDDK NIH HHS UH2 DK093990NIDDK NIH HHS UH3 DK083990NINR NIH HHS R01 NR005337NINR NIH HHS R01 NR013497NINR NIH HHS R01 NR05337
6 · The paper itself

Abstract

backgroundThe gut microbiome influences myriad host functions, including nutrient acquisition, immune modulation, brain development, and behavior. Although human gut microbiota are recognized to change as we age, information regarding the structure and function of the gut microbiome during childhood is limited. Using 16S rRNA gene and shotgun metagenomic sequencing, we characterized the structure, function, and variation of the healthy pediatric gut microbiome in a cohort of school-aged, pre-adolescent children (ages 7-12 years). We compared the healthy pediatric gut microbiome with that of healthy adults previously recruited from the same region (Houston, TX, USA).

resultsAlthough healthy children and adults harbored similar numbers of taxa and functional genes, their composition and functional potential differed significantly. Children were enriched in Bifidobacterium spp., Faecalibacterium spp., and members of the Lachnospiraceae, while adults harbored greater abundances of Bacteroides spp. From a functional perspective, significant differences were detected with respect to the relative abundances of genes involved in vitamin synthesis, amino acid degradation, oxidative phosphorylation, and triggering mucosal inflammation. Children's gut communities were enriched in functions which may support ongoing development, while adult communities were enriched in functions associated with inflammation, obesity, and increased risk of adiposity.

conclusionsPrevious studies suggest that the human gut microbiome is relatively stable and adult-like after the first 1 to 3 years of life. Our results suggest that the healthy pediatric gut microbiome harbors compositional and functional qualities that differ from those of healthy adults and that the gut microbiome may undergo a more prolonged development than previously suspected.

Indexed as

BiodiversityGastrointestinal MicrobiomeAdultAge FactorsChildCluster AnalysisDNA Barcoding, TaxonomicFemaleHealthy VolunteersHumansMaleMetagenomeRNA, Ribosomal, 16SRNA, Ribosomal, 16S

Identifiers

PMID26306392
PMCPMC4550057
OpenAlexW2096500845

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.