Evidence map›Paper›PMID 26306040›Full record

ArticleThe Journal of biological chemistry2015

Assembly of the Arp5 (Actin-related Protein) Subunit Involved in Distinct INO80 Chromatin Remodeling Activities.

Wei Yao, Sean L Beckwith, Tina Zheng, Thomas Young, Van T Dinh, Anand Ranjan, Ashby J Morrison

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Envisioning a role for nuclear actin in prophase I spermatocytes.Frontiers in cell and developmental biology · 2023
    Review
  8. Article
  9. Article
  10. Nuclear Actin Dynamics in Gene Expression, DNA Repair, and Cancer.Results and problems in cell differentiation · 2022
    Article
  11. Article
  12. Review
  13. Review
  14. Molecular basis for chromatin assembly and modification by multiprotein complexes.Protein science : a publication of the Protein Society · 2019
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Genome maintenance functions of the INO80 chromatin remodeller.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Wei YaoFrom the Department of Biology, Stanford University, Stanford California 94305 and.
Sean L BeckwithFrom the Department of Biology, Stanford University, Stanford California 94305 and.
Tina ZhengFrom the Department of Biology, Stanford University, Stanford California 94305 and.
Thomas YoungFrom the Department of Biology, Stanford University, Stanford California 94305 and.
Van T DinhFrom the Department of Biology, Stanford University, Stanford California 94305 and.
Anand RanjanLaboratory of Biochemistry and Molecular Biology, NCI, National Institutes of Health, Bethesda, Maryland 20892.
Ashby J MorrisonFrom the Department of Biology, Stanford University, Stanford California 94305 and ashbym@stanford.edu.
Stanford University · USNational Institutes of Health · US

Funding

INSTITUTIONAL TRAINING GRANT IN GENOME SCIENCET32HG000044 · NHGRI · STANFORD UNIVERSITY · PI MICHAEL P. SNYDER · 1995 to 2026
$32.2M
Chromatin-modifying functions of INO80 in the preservation of genomic integrityR00GM085212 · NIGMS · STANFORD UNIVERSITY · PI MORRISON, ASHBY J. · 2009 to 2011
$784k
Chromatin-modifying functions of INO80 in the preservation of genomic integrityK99GM085212 · NIGMS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI MORRISON, ASHBY J. · 2008 to 2008
$90k
NIGMS NIH HHS K99 GM085212NIGMS NIH HHS R00 GM085212
6 · The paper itself

Abstract

ATP-dependent chromatin remodeling, which repositions and restructures nucleosomes, is essential to all DNA-templated processes. The INO80 chromatin remodeling complex is an evolutionarily conserved complex involved in diverse cellular processes, including transcription, DNA repair, and replication. The functional diversity of the INO80 complex can, in part, be attributed to specialized activities of distinct subunits that compose the complex. Furthermore, structural analyses have identified biochemically discrete subunit modules that assemble along the Ino80 ATPase scaffold. Of particular interest is the Saccharomyces cerevisiae Arp5-Ies6 module located proximal to the Ino80 ATPase and the Rvb1-Rvb2 helicase module needed for INO80-mediated in vitro activity. In this study we demonstrate that the previously uncharacterized Ies2 subunit is required for Arp5-Ies6 association with the catalytic components of the INO80 complex. In addition, Arp5-Ies6 module assembly with the INO80 complex is dependent on distinct conserved domains within Arp5, Ies6, and Ino80, including the spacer region within the Ino80 ATPase domain. Arp5-Ies6 interacts with chromatin via assembly with the INO80 complex, as IES2 and INO80 deletion results in loss of Arp5-Ies6 chromatin association. Interestingly, ectopic addition of the wild-type Arp5-Ies6 module stimulates INO80-mediated ATP hydrolysis and nucleosome sliding in vitro. However, the addition of mutant Arp5 lacking unique insertion domains facilitates ATP hydrolysis in the absence of nucleosome sliding. Collectively, these results define the requirements of Arp5-Ies6 assembly, which are needed to couple ATP hydrolysis to productive nucleosome movement.

Indexed as

Chromatin Assembly and DisassemblyProtein Structure, TertiarySaccharomyces cerevisiae ProteinsINO80 complex, S cerevisiaeSaccharomyces cerevisiae ProteinsArp5chromatinchromatin regulationchromatin remodelinghistoneIes2Ies6INO80nucleosomeprotein complex

Identifiers

PMID26306040
PMCPMC4646212
OpenAlexW2278141380

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.