Evidence map›Paper›PMID 26306008›Full record

ArticlePLoS genetics2015

Non-synonymous FGD3 Variant as Positional Candidate for Disproportional Tall Stature Accounting for a Carcass Weight QTL (CW-3) and Skeletal Dysplasia in Japanese Black Cattle.

Akiko Takasuga, Kunio Sato, Ryouichi Nakamura, Yosuke Saito, Shinji Sasaki, Takehito Tsuji, Akio Suzuki, Hiroshi Kobayashi, Tamako Matsuhashi, Koji Setoguchi and 11 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 28 citations in OpenAlex.

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  6. Comprehensive analysis of 124 transcriptomes from 31 tissues in developing, juvenile, and adult Japanese Black cattle.DNA research : an international journal for rapid publication of reports on genes and genomes · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 13 institutions in 1 country.

Akiko TakasugaNational Livestock Breeding Center, Odakura, Nishigo, Fukushima, Japan; Shirakawa Institute of Animal Genetics, Japan Livestock Technology Association, Odakura, Nishigo, Fukushima, Japan.
Kunio SatoOita Prefectural Agriculture, Forestry and Fisheries Research Center, Kuju, Takeda, Oita, Japan.
Ryouichi NakamuraShimane Prefectural Livestock Technology Center, Koshi, Izumo, Shimane, Japan.
Yosuke SaitoMiyagi Prefectural Livestock Experiment Station, Iwadeyama, Osaki, Miyagi, Japan.
Shinji SasakiNational Livestock Breeding Center, Odakura, Nishigo, Fukushima, Japan; Shirakawa Institute of Animal Genetics, Japan Livestock Technology Association, Odakura, Nishigo, Fukushima, Japan.
Takehito TsujiGraduate School of Environmental and Life Science, Okayama University, Tsushima-naka, Okayama, Japan.
Akio SuzukiAomori Prefectural Industrial Technology Research Center, Moritatukimino, Morita, Tugaru, Aomori, Japan.
Hiroshi KobayashiOkayama Prefectural Research Institute of Livestock Industry, Misaki, Kume, Okayama, Japan.
Tamako MatsuhashiGifu Prefectural Livestock Research Institute, Kiyomi, Takayama, Gifu, Japan.
Koji SetoguchiCattle Breeding Development Institute of Kagoshima Prefecture, Osumi, So, Kagoshima, Japan.
Hiroshi OkabeNagasaki Prefectural Beef Cattle Improvement Center, Tabiracho Kotedamen, Hirado, Nagasaki, Japan.
Toshitake OotsuboSaga Prefectural Livestock Experiment Station, Yamauchi, Takeo, Saga, Japan.
Ichiro TabuchiTottori Animal Husbandry Experiment Station, Kotoura, Touhaku, Tottori, Japan.
Tatsuo FujitaOita Prefectural Agriculture, Forestry and Fisheries Research Center, Kuju, Takeda, Oita, Japan.
Naoto WatanabeOita Prefectural Agriculture, Forestry and Fisheries Research Center, Kuju, Takeda, Oita, Japan.
Takashi HiranoShirakawa Institute of Animal Genetics, Japan Livestock Technology Association, Odakura, Nishigo, Fukushima, Japan.
Shota NishimuraShirakawa Institute of Animal Genetics, Japan Livestock Technology Association, Odakura, Nishigo, Fukushima, Japan.
Toshio WatanabeShirakawa Institute of Animal Genetics, Japan Livestock Technology Association, Odakura, Nishigo, Fukushima, Japan.
Makio HayakawaSchool of Pharmacy, Tokyo University of Pharmacy and Life Science, Hachioji, Tokyo, Japan.
Yoshikazu SugimotoShirakawa Institute of Animal Genetics, Japan Livestock Technology Association, Odakura, Nishigo, Fukushima, Japan.
Takatoshi KojimaNational Livestock Breeding Center, Odakura, Nishigo, Fukushima, Japan.
Institute of Livestock and Grassland Science · JPTakeda (Japan) · JPNational Livestock Breeding Center · JPAomori Prefectural Industrial Technology Center · JPGifu Prefectural Research Institute for Forests · JPNagasaki Prefectural Nagasaki Technical High School · JPOkayama Prefecture · JPOkayama University · JPSaga Prefectural Education Center · JPShimane Prefectural Police · JPTochigi Prefectural Fisheries Experimental Station · JPTokyo University of Pharmacy and Life Sciences · JPTottori Prefectural Museum · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recessive skeletal dysplasia, characterized by joint- and/or hip bone-enlargement, was mapped within the critical region for a major quantitative trait locus (QTL) influencing carcass weight; previously named CW-3 in Japanese Black cattle. The risk allele was on the same chromosome as the Q allele that increases carcass weight. Phenotypic characterization revealed that the risk allele causes disproportional tall stature and bone size that increases carcass weight in heterozygous individuals but causes disproportionately narrow chest width in homozygotes. A non-synonymous variant of FGD3 was identified as a positional candidate quantitative trait nucleotide (QTN) and the corresponding mutant protein showed reduced activity as a guanine nucleotide exchange factor for Cdc42. FGD3 is expressed in the growth plate cartilage of femurs from bovine and mouse. Thus, loss of FDG3 activity may lead to subsequent loss of Cdc42 function. This would be consistent with the columnar disorganization of proliferating chondrocytes in chondrocyte-specific inactivated Cdc42 mutant mice. This is the first report showing association of FGD3 with skeletal dysplasia.

Indexed as

Amino Acid SequenceAnimalsBody HeightBody WeightBone Diseases, DevelopmentalCattleCattle DiseasesDNA Mutational AnalysisFemaleGene ExpressionGenetic Association StudiesGenetic Predisposition to DiseaseGrowth PlateGuanine Nucleotide Exchange FactorsHaplotypesHomozygoteGuanine Nucleotide Exchange FactorsProtein Tyrosine Phosphatases

Identifiers

PMID26306008
PMCPMC4549114
OpenAlexW1697411527

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.