Evidence map›Paper›PMID 26305943›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Provirophages in the Bigelowiella genome bear testimony to past encounters with giant viruses.

Guillaume Blanc, Lucie Gallot-Lavallée, Florian Maumus

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Endogenized polinton-like viruses in the dinoflagellateThe Journal of general virology · 2025
    Article
  8. Article
  9. The polinton-like supergroup of viruses: evolution, molecular biology, and taxonomy.Microbiology and molecular biology reviews : MMBR · 2024
    Review
  10. Review
  11. Article
  12. Endogenous virophages are active and mitigate giant virus infection in the marine protistProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. Viral Complexity.Biomolecules · 2022
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors.

Guillaume BlancLaboratoire Information Génomique et Structurale, UMR7256 (Institut de Microbiologie de la Méditerranée FR3479) CNRS, Aix-Marseille Université, 13288 Marseille cedex 9, France; guillaume.blanc@igs.cnrs-mrs.fr fmaumus@versailles.inra.fr.
Lucie Gallot-LavalléeLaboratoire Information Génomique et Structurale, UMR7256 (Institut de Microbiologie de la Méditerranée FR3479) CNRS, Aix-Marseille Université, 13288 Marseille cedex 9, France;
Florian MaumusINRA, UR1164 Unité de Recherche Génomique-Info, Institut National de la Recherche Agronomique de Versailles-Grignon, 78026 Versailles, France guillaume.blanc@igs.cnrs-mrs.fr fmaumus@versailles.inra.fr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Virophages are recently discovered double-stranded DNA virus satellites that prey on giant viruses (nucleocytoplasmic large DNA viruses; NCLDVs), which are themselves parasites of unicellular eukaryotes. This coupled parasitism can result in the indirect control of eukaryotic cell mortality by virophages. However, the details of such tripartite relationships remain largely unexplored. We have discovered ∼300 predicted genes of putative virophage origin in the nuclear genome of the unicellular alga Bigelowiella natans. Physical clustering of these genes indicates that virophage genomes are integrated into the B. natans genome. Virophage inserts show high levels of similarity and synteny between each other, indicating that they are closely related. Virophage genes are transcribed not only in the sequenced B. natans strain but also in other Bigelowiella isolates, suggesting that transcriptionally active virophage inserts are widespread in Bigelowiella populations. Evidence that B. natans is also a host to NCLDV members is provided by the identification of NCLDV inserts in its genome. These putative large DNA viruses may be infected by B. natans virophages. We also identify four repeated elements sharing structural and genetic similarities with transpovirons--a class of mobile elements first discovered in giant viruses--that were probably independently inserted in the B. natans genome. We argue that endogenized provirophages may be beneficial to both the virophage and B. natans by (i) increasing the chances for the virophage to coinfect the host cell with an NCLDV prey and (ii) defending the host cell against fatal NCLDV infections.

Indexed as

Genome, ProtozoanCapsidCercozoaCodonDNA, ProtozoanDNA, ViralDNA VirusesGenetic MarkersGenome, ViralLikelihood FunctionsModels, GeneticOpen Reading FramesPhylogenyProtein Structure, TertiarySequence Analysis, RNACodonDNA, ProtozoanDNA, ViralGenetic Markersendogenous virusMaverick/polintonmicrobial communitynucleocytoplasmic large DNA virusvirophage

Identifiers

PMID26305943
PMCPMC4586850

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.