Evidence map›Paper›PMID 26305940›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Allosteric activation of apicomplexan calcium-dependent protein kinases.

Jessica R Ingram, Kevin E Knockenhauer, Benedikt M Markus, Joseph Mandelbaum, Alexander Ramek, Yibing Shan, David E Shaw, Thomas U Schwartz, Hidde L Ploegh, Sebastian Lourido

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 66 citations in OpenAlex.

  1. Article
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  11. Phosphorylation-dependent subfunctionalization of the calcium-dependent protein kinase CPK28.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  12. Article
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  14. Exploring cellular biochemistry with nanobodies.The Journal of biological chemistry · 2020
    Review
  15. Allosteric inhibition of LRRK2, where are we now.Biochemical Society transactions · 2020
    Review
  16. Article
  17. Article
  18. Nanobody-based CAR T cells that target the tumor microenvironment inhibit the growth of solid tumors in immunocompetent mice.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  19. Calcium signaling and the lytic cycle of the Apicomplexan parasite Toxoplasma gondii.Biochimica et biophysica acta. Molecular cell research · 2018
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Jessica R IngramWhitehead Institute for Biomedical Research, Cambridge, MA 02142;
Kevin E KnockenhauerDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139;
Benedikt M MarkusWhitehead Institute for Biomedical Research, Cambridge, MA 02142;
Joseph MandelbaumWhitehead Institute for Biomedical Research, Cambridge, MA 02142;
Alexander RamekD. E. Shaw Research, New York, NY 10036;
Yibing ShanD. E. Shaw Research, New York, NY 10036;
David E ShawD. E. Shaw Research, New York, NY 10036; Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032.
Thomas U SchwartzDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139;
Hidde L PloeghWhitehead Institute for Biomedical Research, Cambridge, MA 02142; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139;
Sebastian LouridoWhitehead Institute for Biomedical Research, Cambridge, MA 02142; lourido@wi.mit.edu.ORCID http://orcid.org/0000-0002-5237-1095
Whitehead Institute for Biomedical Research · USD. E. Shaw Research · USMassachusetts Institute of Technology · US

Funding

PRE-DOCTORAL TRAINING IN THE BIOLOGICAL SCIENCEST32GM007287 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BELL, STEPHEN P., KEATING, AMY E · 1985 to 2019
$40.8M
Overall EvaluationP41GM103403 · NIGMS · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2012 to 2017
$14.3M
A new strategy to disrupt protein-protein interactions in eukaryotic cells.DP1GM106409 · NIGMS · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI PLOEGH, HIDDE L. · 2012 to 2016
$4.8M
Dissecting essential signaling pathways in apicomplexan parasitesDP5OD017892 · OD · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI LOURIDO, SEBASTIAN · 2013 to 2017
$2.4M
NIGMS NIH HHS DP1 GM106409NIGMS NIH HHS GM103403NIGMS NIH HHS P41 GM103403NIGMS NIH HHS T32 GM007287NIGMS NIH HHS T32GM007287NIH HHS 1DP5OD017892NIH HHS DP5 OD017892
6 · The paper itself

Abstract

Calcium-dependent protein kinases (CDPKs) comprise the major group of Ca2+-regulated kinases in plants and protists. It has long been assumed that CDPKs are activated, like other Ca2+-regulated kinases, by derepression of the kinase domain (KD). However, we found that removal of the autoinhibitory domain from Toxoplasma gondii CDPK1 is not sufficient for kinase activation. From a library of heavy chain-only antibody fragments (VHHs), we isolated an antibody (1B7) that binds TgCDPK1 in a conformation-dependent manner and potently inhibits it. We uncovered the molecular basis for this inhibition by solving the crystal structure of the complex and simulating, through molecular dynamics, the effects of 1B7-kinase interactions. In contrast to other Ca2+-regulated kinases, the regulatory domain of TgCDPK1 plays a dual role, inhibiting or activating the kinase in response to changes in Ca2+ concentrations. We propose that the regulatory domain of TgCDPK1 acts as a molecular splint to stabilize the otherwise inactive KD. This dependence on allosteric stabilization reveals a novel susceptibility in this important class of parasite enzymes.

Indexed as

Protein Structure, TertiaryAllosteric RegulationAnimalsAntibodies, ProtozoanBiocatalysisBlotting, WesternCalciumCalcium-Calmodulin-Dependent Protein KinasesCamelids, New WorldCells, CulturedCrystallography, X-RayEnzyme ActivationHumansImmunoglobulin Heavy ChainsMolecular Dynamics SimulationMutationAntibodies, ProtozoanCalciumCalcium-Calmodulin-Dependent Protein KinasesImmunoglobulin Heavy ChainsProtein KinasesProtozoan ProteinsSingle-Domain Antibodiescalcium-dependent protein kinasekinase activationVHH

Identifiers

PMID26305940
PMCPMC4568647
OpenAlexW2096059243

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.