Evidence map›Paper›PMID 26305378›Full record

ArticleThe New phytologist2016

Comparative genomics of Fusarium oxysporum f. sp. melonis reveals the secreted protein recognized by the Fom-2 resistance gene in melon.

Sarah Maria Schmidt, Joanna Lukasiewicz, Rhys Farrer, Peter van Dam, Chiara Bertoldo, Martijn Rep

Abstract read
In one paragraph

Article in The New phytologist, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. The Ubiquitous Wilt-Inducing PathogenPathogens (Basel, Switzerland) · 2024
    Review
  5. Article
  6. Draft Genome and Biological Characteristics ofInternational journal of molecular sciences · 2023
    Article
  7. Advances in Fungal Elicitor-Triggered Plant Immunity.International journal of molecular sciences · 2022
    Review
  8. Article
  9. Article
  10. Review
  11. Transcriptomic Analysis ofFrontiers in plant science · 2022
    Article
  12. Article
  13. De novo genome sequencing of mycoparasite Mycogone perniciosa strain MgR1 sheds new light on its biological complexity.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2021
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. A Genomic Blueprint of Flax Fungal ParasiteInternational journal of molecular sciences · 2021
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Sarah Maria SchmidtMolecular Plant Pathology Group, Swammerdam Institute for Life Sciences, University of Amsterdam, 1090 GE, Amsterdam, the Netherlands.
Joanna LukasiewiczMolecular Plant Pathology Group, Swammerdam Institute for Life Sciences, University of Amsterdam, 1090 GE, Amsterdam, the Netherlands.
Rhys FarrerGenome Sequencing and Analysis Program, The Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA.
Peter van DamMolecular Plant Pathology Group, Swammerdam Institute for Life Sciences, University of Amsterdam, 1090 GE, Amsterdam, the Netherlands.
Chiara BertoldoMolecular Plant Pathology Group, Swammerdam Institute for Life Sciences, University of Amsterdam, 1090 GE, Amsterdam, the Netherlands.
Martijn RepMolecular Plant Pathology Group, Swammerdam Institute for Life Sciences, University of Amsterdam, 1090 GE, Amsterdam, the Netherlands.

Funding

Wellcome Trust 101774
6 · The paper itself

Abstract

Development of resistant crops is the most effective way to control plant diseases to safeguard food and feed production. Disease resistance is commonly based on resistance genes, which generally mediate the recognition of small proteins secreted by invading pathogens. These proteins secreted by pathogens are called 'avirulence' proteins. Their identification is important for being able to assess the usefulness and durability of resistance genes in agricultural settings. We have used genome sequencing of a set of strains of the melon wilt fungus Fusarium oxysporum f. sp. melonis (Fom), bioinformatics-based genome comparison and genetic transformation of the fungus to identify AVRFOM2, the gene that encodes the avirulence protein recognized by the melon Fom-2 gene. Both an unbiased and a candidate gene approach identified a single candidate for the AVRFOM2 gene. Genetic complementation of AVRFOM2 in three different race 2 isolates resulted in resistance of Fom-2-harbouring melon cultivars. AvrFom2 is a small, secreted protein with two cysteine residues and weak similarity to secreted proteins of other fungi. The identification of AVRFOM2 will not only be helpful to select melon cultivars to avoid melon Fusarium wilt, but also to monitor how quickly a Fom population can adapt to deployment of Fom-2-containing cultivars in the field.

Indexed as

GenomicsBase SequenceChromosome MappingCucumis meloDisease ResistanceDNA Transposable ElementsFungal ProteinsFusariumGenetic Complementation TestGenome, FungalHigh-Throughput Nucleotide SequencingPhylogenyPlant DiseasesPlant ProteinsPromoter Regions, GeneticSequence Analysis, DNADNA Transposable ElementsFungal ProteinsPlant ProteinsAVRFOM2comparative genomicsFusarium oxysporum f. sp. Melonisgene-for-gene interactionmelon Fom-2 resistance genevirulence gene

Identifiers

PMID26305378
PMCPMC5769816

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.