Evidence map›Paper›PMID 26304120›Full record

ArticleThe Journal of biological chemistry2015

Loss of a Functionally and Structurally Distinct ld-Transpeptidase, LdtMt5, Compromises Cell Wall Integrity in Mycobacterium tuberculosis.

Leighanne A Brammer Basta, Anita Ghosh, Ying Pan, Jean Jakoncic, Evan P Lloyd, Craig A Townsend, Gyanu Lamichhane, Mario A Bianchet

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
  2. Activity Profiling of Mycobacterial L,D-Transpeptidases.bioRxiv : the preprint server for biology · 2026
    Article
  3. Peptidoglycan LD-Transpeptidases.Antibiotics (Basel, Switzerland) · 2025
    Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. A pro-oxidant property of vitamin C to overcome the burden of latentFrontiers in cellular and infection microbiology · 2023
    Review
  9. The l,d-Transpeptidase LdtACS infectious diseases · 2022
    Article
  10. Article
  11. Article
  12. T405, a New Penem, ExhibitsAntimicrobial agents and chemotherapy · 2022
    Article
  13. Article
  14. Competing off-loading mechanisms of meropenem from an l,d-transpeptidase reduce antibiotic effectiveness.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  15. Investigating β-Lactam Drug Targets inACS infectious diseases · 2021
    Article
  16. Complete Genome Sequence of the Newly DevelopedFrontiers in microbiology · 2021
    Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Leighanne A Brammer BastaFrom the Taskforce to study Resistance Emergence and Antimicrobial development Technology (TREAT) and Division of Infectious Diseases, The Johns Hopkins University School of Medicine, Baltimore, Maryland 21231.ORCID http://orcid.org/0000-0002-4121-5505
Anita GhoshStructural Enzymology and Thermodynamics Group, Department of Biophysics and Biophysical Chemistry and.
Ying PanStructural Enzymology and Thermodynamics Group, Department of Biophysics and Biophysical Chemistry and.
Jean JakoncicNational Synchrotron Light Source II, Brookhaven National Laboratory, Upton, New York 11973, and.
Evan P LloydDepartment of Chemistry, The Johns Hopkins University, Baltimore, Maryland 21218.
Craig A TownsendDepartment of Chemistry, The Johns Hopkins University, Baltimore, Maryland 21218.
Gyanu LamichhaneFrom the Taskforce to study Resistance Emergence and Antimicrobial development Technology (TREAT) and Division of Infectious Diseases, The Johns Hopkins University School of Medicine, Baltimore, Maryland 21231, lamichhane@jhu.edu.ORCID http://orcid.org/0000-0002-2214-0114
Mario A BianchetStructural Enzymology and Thermodynamics Group, Department of Biophysics and Biophysical Chemistry and Department of Neurology, The Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, bianchet@jhmi.edu.ORCID http://orcid.org/0000-0001-9032-7549
Johns Hopkins University · USBrookhaven National Laboratory · US

Funding

New Drug for Treatment of Chronic Bacterial InfectionDP2OD008459 · OD · JOHNS HOPKINS UNIVERSITY · PI LAMICHHANE, GYANU · 2011 to 2013
$2.6M
NIGMS NIH HHS Y01 GM000080NIH HHS DP2 OD008459NIH HHS DP2OD008459
6 · The paper itself

Abstract

The final step of peptidoglycan (PG) biosynthesis in bacteria involves cross-linking of peptide side chains. This step in Mycobacterium tuberculosis is catalyzed by ld- and dd-transpeptidases that generate 3→3 and 4→3 transpeptide linkages, respectively. M. tuberculosis PG is predominantly 3→3 cross-linked, and LdtMt2 is the dominant ld-transpeptidase. There are four additional sequence paralogs of LdtMt2 encoded by the genome of this pathogen, and the reason for this apparent redundancy is unknown. Here, we studied one of the paralogs, LdtMt5, and found it to be structurally and functionally distinct. The structures of apo-LdtMt5 and its meropenem adduct presented here demonstrate that, despite overall architectural similarity to LdtMt2, the LdtMt5 active site has marked differences. The presence of a structurally divergent catalytic site and a proline-rich C-terminal subdomain suggest that this protein may have a distinct role in PG metabolism, perhaps involving other cell wall-anchored proteins. Furthermore, M. tuberculosis lacking a functional copy of LdtMt5 displayed aberrant growth and was more susceptible to killing by crystal violet, osmotic shock, and select carbapenem antibiotics. Therefore, we conclude that LdtMt5 is not a functionally redundant ld-transpeptidase, but rather it serves a unique and important role in maintaining the integrity of the M. tuberculosis cell wall.

Indexed as

Amino Acid SequenceCatalysisCatalytic DomainCell WallHydrogen-Ion ConcentrationHydrolysisHydrophobic and Hydrophilic InteractionsMolecular Sequence DataMycobacterium tuberculosisPeptidoglycanPeptidyl TransferasesProtein ConformationSequence Homology, Amino AcidPeptidoglycanPeptidyl Transferasesantibioticsbiosynthesiscell wallenzyme kineticsenzyme structureMycobacterium tuberculosispeptidoglycan

Identifiers

PMID26304120
PMCPMC4646210
OpenAlexW1798304585

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.