Evidence map›Paper›PMID 26304116›Full record

ArticleThe Journal of biological chemistry2015

Small Retinoprotective Peptides Reveal a Receptor-binding Region on Pigment Epithelium-derived Factor.

Jason Kenealey, Preeti Subramanian, Antonella Comitato, Jeanee Bullock, Laura Keehan, Federica Polato, David Hoover, Valeria Marigo, S Patricia Becerra

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 41 citations in OpenAlex.

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  16. Review
  17. New In Vitro Cellular Model for Molecular Studies of Retinitis Pigmentosa.International journal of molecular sciences · 2021
    Article
  18. Delivery Systems of Retinoprotective Proteins in the Retina.International journal of molecular sciences · 2021
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Jason KenealeyFrom the National Eye Institute and.
Preeti SubramanianFrom the National Eye Institute and.
Antonella Comitatothe Department of Life Sciences, University of Modena and Reggio Emilia, 41125 Modena, Italy, and.
Jeanee BullockFrom the National Eye Institute and the Department of Biochemistry and Molecular and Cellular Biology, Georgetown University, Washington, D. C. 20057.
Laura KeehanFrom the National Eye Institute and.
Federica PolatoFrom the National Eye Institute and.
David Hooverthe Center for Information Technology, National Institutes of Health, Bethesda, Maryland 20892.
Valeria Marigothe Department of Life Sciences, University of Modena and Reggio Emilia, 41125 Modena, Italy, and.
S Patricia BecerraFrom the National Eye Institute and becerrap@nei.nih.gov.
National Institutes of Health · USUniversity of Modena and Reggio Emilia · ITGeorgetown University · US

Funding

Role of Protein Interactions in Retina Development and FunctionZIAEY000306 · NEI · NATIONAL EYE INSTITUTE · PI BECERRA, S. PATRICIA · 2009 to 2025
$15.6M
Therapeutics for the chorioretinaZIAEY000438 · NEI · NATIONAL EYE INSTITUTE · PI BECERRA, S. PATRICIA · 2009 to 2025
$6.7M
Intramural NIH HHS ZIA EY000306Telethon GGP14180
6 · The paper itself

Abstract

The cytoprotective effects of pigment epithelium-derived factor (PEDF) require interactions between an as of a yet undefined region with a distinct ectodomain on the PEDF receptor (PEDF-R). Here we characterized the area in PEDF that interacts with PEDF-R to promote photoreceptor survival. Molecular docking studies suggested that the ligand binding site of PEDF-R interacts with the neurotrophic region of PEDF (44-mer, positions 78-121). Binding assays demonstrated that PEDF-R bound the 44-mer peptide. Moreover, peptide P1 from the PEDF-R ectodomain had affinity for the 44-mer and a shorter fragment within it, 17-mer (positions 98-114). Single residue substitutions to alanine along the 17-mer sequence were designed and tested for binding and biological activity. Altered 17-mer[R99A] did not bind to the P1 peptide, whereas 17-mer[H105A] had higher affinity than the unmodified 17-mer. Peptides 17-mer, 17-mer[H105A], and 44-mer exhibited cytoprotective effects in cultured retina R28 cells. Intravitreal injections of these peptides and PEDF in the rd1 mouse model of retinal degeneration decreased the numbers of dying photoreceptors, 17-mer[H105A] being most effective. The blocking peptide P1 hindered their protective effects both in retina cells and in vivo. Thus, in addition to demonstrating that the region composed of positions 98-114 of PEDF contains critical residues for PEDF-R interaction that mediates survival effects, the findings reveal distinct small PEDF fragments with neurotrophic effects on photoreceptors.

Indexed as

Amino Acid SequenceBinding SitesEye ProteinsMolecular Docking SimulationMolecular Sequence DataNerve Growth FactorsPeptidesPhotoreceptor Cells, VertebratePigment Epithelium-Derived FactorRetinaSerpinsEye ProteinsNerve Growth FactorsPeptidesPigment Epithelium-Derived FactorSerpinscell deathcell surface receptormolecular modelingmouseneuroprotectionpeptide interactionphotoreceptorprotein structureretinaserpin

Identifiers

PMID26304116
PMCPMC4646175
OpenAlexW1821227027

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.