Evidence map›Paper›PMID 26303777›Full record

ArticleMolecular microbiology2015

Refining the pH response in Aspergillus nidulans: a modulatory triad involving PacX, a novel zinc binuclear cluster protein.

Henk-Jan Bussink, Elaine M Bignell, Tatiana Múnera-Huertas, Daniel Lucena-Agell, Claudio Scazzocchio, Eduardo A Espeso, Margherita Bertuzzi, Joanna Rudnicka, Susana Negrete-Urtasun, Maria M Peñas-Parilla and 4 more

Open access · hybridAbstract read
In one paragraph

Article in Molecular microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 3 countries.

Henk-Jan BussinkSection of Microbiology, Imperial College London, Flowers Building, Armstrong Road, London, SW7 2AZ, UK.
Elaine M BignellSection of Microbiology, Imperial College London, Flowers Building, Armstrong Road, London, SW7 2AZ, UK.
Tatiana Múnera-HuertasSection of Microbiology, Imperial College London, Flowers Building, Armstrong Road, London, SW7 2AZ, UK.
Daniel Lucena-AgellDepartment of Cellular and Molecular Biology, Centro de Investigaciones Biológicas CSIC, Ramiro de Maeztu 9, Madrid, 28040, Spain.
Claudio ScazzocchioSection of Microbiology, Imperial College London, Flowers Building, Armstrong Road, London, SW7 2AZ, UK.
Eduardo A EspesoDepartment of Cellular and Molecular Biology, Centro de Investigaciones Biológicas CSIC, Ramiro de Maeztu 9, Madrid, 28040, Spain.
Margherita BertuzziManchester Fungal Infection Group, Institute for Inflammation and Repair, University of Manchester, 46 Grafton Street, Manchester, M13 9NT, UK.
Joanna RudnickaSection of Microbiology, Imperial College London, Flowers Building, Armstrong Road, London, SW7 2AZ, UK.
Susana Negrete-UrtasunSection of Microbiology, Imperial College London, Flowers Building, Armstrong Road, London, SW7 2AZ, UK.
Maria M Peñas-ParillaSection of Microbiology, Imperial College London, Flowers Building, Armstrong Road, London, SW7 2AZ, UK.
Lynne RainbowSection of Microbiology, Imperial College London, Flowers Building, Armstrong Road, London, SW7 2AZ, UK.
Miguel Á PeñalvaDepartment of Cellular and Molecular Biology, Centro de Investigaciones Biológicas CSIC, Ramiro de Maeztu 9, Madrid, 28040, Spain.
Herbert N ArstSection of Microbiology, Imperial College London, Flowers Building, Armstrong Road, London, SW7 2AZ, UK.
Joan TilburnSection of Microbiology, Imperial College London, Flowers Building, Armstrong Road, London, SW7 2AZ, UK.
Imperial College London · GBCentro de Investigaciones Biológicas Margarita Salas · ESInstitut de Biologie Intégrative de la Cellule · FRUniversity of Manchester · GB

Funding

Biotechnology and Biological Sciences Research Council BB/G009619/1Medical Research Council G0501164Medical Research Council MR/L000822/1Medical Research Council MR/M02010X/1NIMHD NIH HHS L60 MD002414Wellcome TrustWellcome Trust 067878Wellcome Trust 084660/Z/08/ZWellcome Trust WT093596MA
6 · The paper itself

Abstract

The Aspergillus nidulans PacC transcription factor mediates gene regulation in response to alkaline ambient pH which, signalled by the Pal pathway, results in the processing of PacC(72) to PacC(27) via PacC(53). Here we investigate two levels at which the pH regulatory system is transcriptionally moderated by pH and identify and characterise a new component of the pH regulatory machinery, PacX. Transcript level analysis and overexpression studies demonstrate that repression of acid-expressed palF, specifying the Pal pathway arrestin, probably by PacC(27) and/or PacC(53), prevents an escalating alkaline pH response. Transcript analyses using a reporter and constitutively expressed pacC trans-alleles show that pacC preferential alkaline-expression results from derepression by depletion of the acid-prevalent PacC(72) form. We additionally show that pacC repression requires PacX. pacX mutations suppress PacC processing recalcitrant mutations, in part, through derepressed PacC levels resulting in traces of PacC(27) formed by pH-independent proteolysis. pacX was cloned by impala transposon mutagenesis. PacX, with homologues within the Leotiomyceta, has an unusual structure with an amino-terminal coiled-coil and a carboxy-terminal zinc binuclear cluster. pacX mutations indicate the importance of these regions. One mutation, an unprecedented finding in A. nidulans genetics, resulted from an insertion of an endogenous Fot1-like transposon.

Indexed as

Zinc FingersAmino Acid SequenceAspergillus nidulansBinding SitesDNA Transposable ElementsFungal ProteinsGene Expression ProfilingGene Expression Regulation, FungalHydrogen-Ion ConcentrationMutagenesisMutationSequence Homology, Amino AcidSignal TransductionDNA Transposable ElementsFungal Proteins

Identifiers

PMID26303777
PMCPMC4832277
OpenAlexW2145975199

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.