ArticleScientific reports2015
High density linkage mapping of genomic and transcriptomic SNPs for synteny analysis and anchoring the genome sequence of chickpea.
Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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Who cites it
18 citing papers in PubMed, 48 citations in OpenAlex.
- Advancing Chickpea Breeding: Omics Insights for Targeted Abiotic Stress Mitigation and Genetic Enhancement.Biochemical genetics · 2025Review
- A Comprehensive Review on Chickpea (International journal of molecular sciences · 2022Review
- Novel Genomic Regions Linked toFrontiers in plant science · 2022Article
- Identification of stable heat tolerance QTLs using inter-specific recombinant inbred line population derived from GPF 2 and ILWC 292.PloS one · 2021Article
- Anchoring a genetic map of an interspecific backcross two family to the genome builds of Elaeis.Journal of genetics · 2021Article
- Karyotype Differentiation in Cultivated Chickpea Revealed by Oligopainting FluorescenceFrontiers in plant science · 2021Article
- Development of a dense genetic map and QTL analysis for pod borer Helicoverpa armigera (Hübner) resistance component traits in chickpea (Cicer arietinum L.).The plant genome · 2020Article
- A high-density SNP-based linkage map using genotyping-by-sequencing and its utilization for improved genome assembly of chickpea (Cicer arietinum L.).Functional & integrative genomics · 2020Article
- Genome-wide SNP discovery for development of high-density genetic map and QTL mapping of ascochyta blight resistance in chickpea (Cicer arietinum L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Article
- The first genetic linkage map for Fraxinus pennsylvanica and syntenic relationships with four related species.Plant molecular biology · 2019Article
- Genome-wide generation and genotyping of informative SNPs to scan molecular signatures for seed yield in chickpea.Scientific reports · 2018Article
- Current advances in chickpea genomics: applications and future perspectives.Plant cell reports · 2018Review
- A consensus linkage map of lentil based on DArT markers from three RIL mapping populations.PloS one · 2018Article
- Transcriptome-based SNP discovery by GBS and the construction of a genetic map for olive.Functional & integrative genomics · 2017Article
- Draft genome sequence of Cicer reticulatum L., the wild progenitor of chickpea provides a resource for agronomic trait improvement.DNA research : an international journal for rapid publication of reports on genes and genomes · 2017Article
- High-resolution genetic maps of Lotus japonicus and L. burttii based on re-sequencing of recombinant inbred lines.DNA research : an international journal for rapid publication of reports on genes and genomes · 2016Article
- Transcriptome landscape of perennial wild Cicer microphyllum uncovers functionally relevant molecular tags regulating agronomic traits in chickpea.Scientific reports · 2016Article
- Identification of candidate genes and natural allelic variants for QTLs governing plant height in chickpea.Scientific reports · 2016Article
Corrections and comments
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Authors and funding
9 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
This study presents genome-wide discovery of SNPs through next generation sequencing of the genome of Cicer reticulatum. Mapping of the C. reticulatum sequenced reads onto the draft genome assembly of C. arietinum (desi chickpea) resulted in identification of 842,104 genomic SNPs which were utilized along with an additional 36,446 genic SNPs identified from transcriptome sequences of the aforementioned varieties. Two new chickpea Oligo Pool All (OPAs) each having 3,072 SNPs were designed and utilized for SNP genotyping of 129 Recombinant Inbred Lines (RILs). Using Illumina GoldenGate Technology genotyping data of 5,041 SNPs were generated and combined with the 1,673 marker data from previously published studies, to generate a high resolution linkage map. The map comprised of 6698 markers distributed on eight linkage groups spanning 1083.93 cM with an average inter-marker distance of 0.16 cM. Utility of the present map was demonstrated for improving the anchoring of the earlier reported draft genome sequence of desi chickpea by ~30% and that of kabuli chickpea by 18%. The genetic map reported in this study represents the most dense linkage map of chickpea , with the potential to facilitate efficient anchoring of the draft genome sequences of desi as well as kabuli chickpea varieties.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.