Evidence map›Paper›PMID 26303531›Full record

ArticleMolecular and cellular biology2015

Functional Requirements for Fab-7 Boundary Activity in the Bithorax Complex.

Daniel Wolle, Fabienne Cleard, Tsutomu Aoki, Girish Deshpande, Paul Schedl, Francois Karch

Abstract read
In one paragraph

Article in Molecular and cellular biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed.

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  12. Transcriptional Readthrough Interrupts Boundary Function in Drosophila.International journal of molecular sciences · 2023
    Article
  13. Boundary Bypass Activity in thebioRxiv : the preprint server for biology · 2023
    Article
  14. Transcriptional read through interrupts boundary function in Drosophila.bioRxiv : the preprint server for biology · 2023
    Article
  15. Mechanisms of Interaction between Enhancers and Promoters in ThreeInternational journal of molecular sciences · 2023
    Review
  16. CRISPR/Cas9 and FLP-FRT mediated regulatory dissection of the BX-C of Drosophila melanogaster.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2023
    Article
  17. Article
  18. Article
  19. Dimerization Activity of a Disordered N-Terminal Domain fromInternational journal of molecular sciences · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Daniel WolleDepartment of Molecular Biology, Princeton University, Princeton, New Jersey, USA.
Fabienne CleardDepartment of Genetics and Evolution, University of Geneva, Geneva, Switzerland.
Tsutomu AokiDepartment of Molecular Biology, Princeton University, Princeton, New Jersey, USA.
Girish DeshpandeDepartment of Molecular Biology, Princeton University, Princeton, New Jersey, USA.
Paul SchedlDepartment of Molecular Biology, Princeton University, Princeton, New Jersey, USA Laboratory of Gene Expression Regulation in Development, Institute of Gene Biology, Russian Academy of Sciences, Moscow, Russia pschedl@princeton.edu.
Francois KarchDepartment of Genetics and Evolution, University of Geneva, Geneva, Switzerland.

Funding

MOLECULAR AND GENETIC ANALYSIS OF CHROMATIN STRUCTURER01GM043432 · NIGMS · PRINCETON UNIVERSITY · PI SCHEDL, PAUL D · 1990 to 2017
$5.8M
Molecular and Genetic Analysis of Chromatin StructureR56GM043432 · NIGMS · PRINCETON UNIVERSITY · PI SCHEDL, PAUL D · 2008 to 2008
$389k
NIGMS NIH HHS GM043432NIGMS NIH HHS R01 GM043432NIGMS NIH HHS R56 GM043432
6 · The paper itself

Abstract

Chromatin boundaries are architectural elements that determine the three-dimensional folding of the chromatin fiber and organize the chromosome into independent units of genetic activity. The Fab-7 boundary from the Drosophila bithorax complex (BX-C) is required for the parasegment-specific expression of the Abd-B gene. We have used a replacement strategy to identify sequences that are necessary and sufficient for Fab-7 boundary function in the BX-C. Fab-7 boundary activity is known to depend on factors that are stage specific, and we describe a novel ∼700-kDa complex, the late boundary complex (LBC), that binds to Fab-7 sequences that have insulator functions in late embryos and adults. We show that the LBC is enriched in nuclear extracts from late, but not early, embryos and that it contains three insulator proteins, GAF, Mod(mdg4), and E(y)2. Its DNA binding properties are unusual in that it requires a minimal sequence of >65 bp; however, other than a GAGA motif, the three Fab-7 LBC recognition elements display few sequence similarities. Finally, we show that mutations which abrogate LBC binding in vitro inactivate the Fab-7 boundary in the BX-C.

Indexed as

AnimalsChromatinDNA-Binding ProteinsDrosophilaDrosophila ProteinsGene Expression RegulationHomeodomain ProteinsNuclear ProteinsTranscription Factorsabd-A protein, DrosophilaAbd-B proteins, DrosophilaChromatinDNA-Binding ProteinsDrosophila ProteinsHomeodomain ProteinsNuclear ProteinsTranscription FactorsTrl protein, DrosophilaUbx protein, Drosophila

Identifiers

PMID26303531
PMCPMC4589599

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.