Evidence map›Paper›PMID 26302378›Full record

ArticleMutation research2015

DNA sequence context greatly affects the accuracy of bypass across an ultraviolet light 6-4 photoproduct in mammalian cells.

Pola Shriber, Yael Leitner-Dagan, Nicholas Geacintov, Tamar Paz-Elizur, Zvi Livneh

Abstract read
In one paragraph

Article in Mutation research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Beyond the Lesion: Back to High Fidelity DNA Synthesis.Frontiers in molecular biosciences · 2021
    Review
  7. Review
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Pola ShriberDepartment of Biological Chemistry, Weizmann Institute of Science, Rehovot, 76100, Israel.
Yael Leitner-DaganDepartment of Biological Chemistry, Weizmann Institute of Science, Rehovot, 76100, Israel.
Nicholas GeacintovChemistry Department, New York University, NY 10003-5180, USA.
Tamar Paz-ElizurDepartment of Biological Chemistry, Weizmann Institute of Science, Rehovot, 76100, Israel. Electronic address: tamar.paz-elizur@weizmann.ac.il.
Zvi LivnehDepartment of Biological Chemistry, Weizmann Institute of Science, Rehovot, 76100, Israel. Electronic address: zvi.livneh@weizmann.ac.il.

Funding

Excision of Carcinogen-DNA Adducts in NucleosomesR01CA168469 · NCI · NEW YORK UNIVERSITY · PI GEACINTOV, NICHOLAS E · 2012 to 2016
$1.6M
NCI NIH HHS R01 CA168469
6 · The paper itself

Abstract

Translesion DNA synthesis (TLS) is a DNA damage tolerance mechanism carried out by low-fidelity DNA polymerases that bypass DNA lesions, which overcomes replication stalling. Despite the miscoding nature of most common DNA lesions, several of them are bypassed in mammalian cells in a relatively accurate manner, which plays a key role maintaining a low mutation load. Whereas it is generally agreed that TLS across the major UV and sunlight induced DNA lesion, the cyclobutane pyrimidine dimer (CPD), is accurate, there were conflicting reports on whether the same is true for the thymine-thymine pyrimidine-pyrimidone(6-4) ultraviolet light photoproduct (TT6-4PP), which represents the second most common class of UV lesions. Using a TLS assay system based on gapped plasmids carrying site-specific TT6-4PP lesions in defined sequence contexts we show that the DNA sequence context markedly affected both the extent and accuracy of TLS. The sequence exhibiting higher TLS exhibited also higher error-frequency, caused primarily by semi-targeted mutations, at the nearest nucleotides flanking the lesion. Our results resolve the discrepancy reported on TLS across TT6-4PP, and suggest that TLS is more accurate in human cells than in mouse cells.

Indexed as

DNA DamageMutationAnimalsCell Line, TransformedHumansMicePyrimidine DimersSpecies SpecificityUltraviolet RaysPyrimidine DimersDNA damageDNA repairError-prone repairLesion bypassUV mutagenesis

Identifiers

PMID26302378
PMCPMC4871125

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.