Evidence map›Paper›PMID 26301736›Full record

ArticleJournal of medicinal chemistry2015

Structure-Based Design of a Small Molecule CD4-Antagonist with Broad Spectrum Anti-HIV-1 Activity.

Francesca Curreli, Young Do Kwon, Hongtao Zhang, Daniel Scacalossi, Dmitry S Belov, Artur A Tikhonov, Ivan A Andreev, Andrea Altieri, Alexander V Kurkin, Peter D Kwong and 1 more

Abstract read
In one paragraph

Article in Journal of medicinal chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Antiviral Protein-Protein Interaction Inhibitors.Journal of medicinal chemistry · 2024
    Review
  3. Review
  4. Antiviral Activity and Crystal Structures of HIV-1 gp120 Antagonists.International journal of molecular sciences · 2022
    Article
  5. Review
  6. Small-Molecule HIV Entry Inhibitors Targeting gp120 and gp41.Advances in experimental medicine and biology · 2022
    Review
  7. Article
  8. Article
  9. Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
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  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Francesca Curreli *Laboratory of Molecular Modeling and Drug Design, Lindsey F. Kimball Research Institute, New York Blood Center, New York, New York 10065, United States.
Young Do Kwon *Vaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland 20892, United States.
Hongtao ZhangLaboratory of Molecular Modeling and Drug Design, Lindsey F. Kimball Research Institute, New York Blood Center, New York, New York 10065, United States.
Daniel ScacalossiLaboratory of Molecular Modeling and Drug Design, Lindsey F. Kimball Research Institute, New York Blood Center, New York, New York 10065, United States.
Dmitry S BelovEDASA Scientific, Scientific Park, Moscow State University, Leninskie Gory, Bld.75, 77-101b, 119992 Moscow, Russia.
Artur A TikhonovEDASA Scientific, Scientific Park, Moscow State University, Leninskie Gory, Bld.75, 77-101b, 119992 Moscow, Russia.
Ivan A AndreevEDASA Scientific, Scientific Park, Moscow State University, Leninskie Gory, Bld.75, 77-101b, 119992 Moscow, Russia.
Andrea AltieriEDASA Scientific, Scientific Park, Moscow State University, Leninskie Gory, Bld.75, 77-101b, 119992 Moscow, Russia.
Alexander V KurkinEDASA Scientific, Scientific Park, Moscow State University, Leninskie Gory, Bld.75, 77-101b, 119992 Moscow, Russia.
Peter D KwongVaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland 20892, United States.
Asim K DebnathLaboratory of Molecular Modeling and Drug Design, Lindsey F. Kimball Research Institute, New York Blood Center, New York, New York 10065, United States.

Funding

Design of inhibitors targeted to the CD4 binding site on HIV-1 gp120R01AI104416 · NIAID · NEW YORK BLOOD CENTER · PI DEBNATH, ASIM K · 2013 to 2022
$7.9M
NIAID NIH HHS R01 AI104416NIAID NIH HHS R01AI104416
6 · The paper itself

Abstract

Earlier we reported the discovery and design of NBD-556 and their analogs which demonstrated their potential as HIV-1 entry inhibitors. However, progress in developing these inhibitors has been stymied by their CD4-agonist properties, an unfavorable trait for use as drug. Here, we demonstrate the successful conversion of a full CD4-agonist (NBD-556) through a partial CD4-agonist (NBD-09027), to a full CD4-antagonist (NBD-11021) by structure-based modification of the critical oxalamide midregion, previously thought to be intolerant of modification. NBD-11021 showed unprecedented neutralization breath for this class of inhibitors, with pan-neutralization against a panel of 56 Env-pseudotyped HIV-1 representing diverse subtypes of clinical isolates (IC50 as low as 270 nM). The cocrystal structure of NBD-11021 complexed to a monomeric HIV-1 gp120 core revealed its detail binding characteristics. The study is expected to provide a framework for further development of NBD series as HIV-1 entry inhibitors for clinical application against AIDS.

Indexed as

Anti-HIV AgentsCD4 AntigensCell FusionCell LineHIV-1HIV Envelope Protein gp120HIV Reverse TranscriptaseHumansHydrogen BondingModels, MolecularMolecular ConformationOxalatesPiperidinesProtein ConformationPyrrolesReceptors, CCR5Anti-HIV AgentsCD4 AntigensHIV Envelope Protein gp120HIV Reverse TranscriptaseN-(4-chlorophenyl)-N'-(2,2,6,6-tetramethylpiperidin-4-yl)oxalamideNBD-11021OxalatesPiperidinesPyrrolesReceptors, CCR5Receptors, CXCR4Reverse Transcriptase InhibitorsThiazoles

Identifiers

PMID26301736
PMCPMC4676410

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.