Evidence map›Paper›PMID 26301566›Full record

ArticleNature immunology2015

TCR affinity for thymoproteasome-dependent positively selecting peptides conditions antigen responsiveness in CD8(+) T cells.

Kensuke Takada, Francois Van Laethem, Yan Xing, Kazuyuki Akane, Haruhiko Suzuki, Shigeo Murata, Keiji Tanaka, Stephen C Jameson, Alfred Singer, Yousuke Takahama

Abstract read
In one paragraph

Article in Nature immunology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed, 1 pooled it
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 1 synthesis or guideline pooled it, 69 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. The Ins and Outs of Thymic Epithelial Cell Differentiation and Function.Advances in experimental medicine and biology · 2025
    Review
  9. Review
  10. The thymoproteasome in shaping the CD8Current opinion in immunology · 2023
    Review
  11. Article
  12. Review
  13. Review
  14. Article
  15. Review
  16. Review
  17. Article
  18. Homeostasis of Naive and Memory T Lymphocytes.Cold Spring Harbor perspectives in biology · 2021
    Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 2 countries.

Kensuke TakadaDivision of Experimental Immunology, Institute for Genome Research, University of Tokushima, Tokushima, Japan.
Francois Van LaethemExperimental Immunology Branch, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, USA.
Yan XingCenter for Immunology, Department of Laboratory Medicine and Pathology, University of Minnesota, Minneapolis, Minnesota, USA.
Kazuyuki AkaneDepartment of Immunology, Graduate School of Medicine, Nagoya University, Nagoya, Japan.
Haruhiko SuzukiDepartment of Immunology, Graduate School of Medicine, Nagoya University, Nagoya, Japan.
Shigeo MurataGraduate School of Pharmaceutical Sciences, University of Tokyo, Tokyo, Japan.ORCID http://orcid.org/0000-0002-3177-3503
Keiji TanakaTokyo Metropolitan Institute of Medical Science, Tokyo, Japan.
Stephen C JamesonCenter for Immunology, Department of Laboratory Medicine and Pathology, University of Minnesota, Minneapolis, Minnesota, USA.
Alfred SingerExperimental Immunology Branch, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, USA.
Yousuke TakahamaDivision of Experimental Immunology, Institute for Genome Research, University of Tokushima, Tokushima, Japan.
Nagoya University · JPNational Institutes of Health · USTokushima University · JPUniversity of Minnesota · USThe University of Tokyo · JPTokyo Metropolitan Institute of Medical Science · JP

Funding

T Cell Differentiation and Repertoire SelectionZIABC009273 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI SINGER, ALFRED · 2009 to 2025
$11.6M
Development and function of regulatory T cellsZIABC011112 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI SINGER, ALFRED · 2009 to 2025
$6.8M
T Cell HomeostasisR01AI038903 · NIAID · UNIVERSITY OF MINNESOTA TWIN CITIES · PI STEPHEN C JAMESON · 2001 to 2026
$5.9M
T cell receptor regulation of cytokine signalingZIABC011117 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI SINGER, ALFRED · 2009 to 2023
$4.8M
Specification of T cell function during developmentZIABC011106 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI SINGER, ALFRED · 2009 to 2023
$4.8M
Cytokine signaling in developing thymocytes and T cellsZIABC011111 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI SINGER, ALFRED · 2009 to 2023
$4.8M
T cell survivalZIABC011113 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI SINGER, ALFRED · 2009 to 2023
$4.8M
Role of microRNAs in T cell developmentZIABC011114 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI SINGER, ALFRED · 2009 to 2023
$4.8M
T cell homeostasisR37AI038903 · NIAID · UNIVERSITY OF MINNESOTA · PI JAMESON, STEPHEN C · 2006 to 2015
$3.6M
Homeostatic Proliferation and Memory CD8 T CellsR01AI075168 · NIAID · UNIVERSITY OF MINNESOTA · PI JAMESON, STEPHEN C · 2008 to 2016
$3.1M
NIAID NIH HHS R01 AI038903NIAID NIH HHS R01 AI075168NIAID NIH HHS R37 AI038903
6 · The paper itself

Abstract

In the thymus, low-affinity T cell antigen receptor (TCR) engagement facilitates positive selection of a useful T cell repertoire. Here we report that TCR responsiveness of mature CD8(+) T cells is fine tuned by their affinity for positively selecting peptides in the thymus and that optimal TCR responsiveness requires positive selection on major histocompatibility complex class I-associated peptides produced by the thymoproteasome, which is specifically expressed in the thymic cortical epithelium. Thymoproteasome-independent positive selection of monoclonal CD8(+) T cells results in aberrant TCR responsiveness, homeostatic maintenance and immune responses to infection. These results demonstrate a novel aspect of positive selection, in which TCR affinity for positively selecting peptides produced by thymic epithelium determines the subsequent antigen responsiveness of mature CD8(+) T cells in the periphery.

Indexed as

AnimalsCD8-Positive T-LymphocytesCell ProliferationFlow CytometryMicePeptidesProteasome Endopeptidase ComplexReceptors, Antigen, T-CellThymus GlandPeptidesProteasome Endopeptidase ComplexReceptors, Antigen, T-Cell

Identifiers

PMID26301566
PMCPMC4810782
OpenAlexW2202471025

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.