Evidence map›Paper›PMID 26300907›Full record

ArticleFrontiers in plant science2015

Functional characterization and reconstitution of ABA signaling components using transient gene expression in rice protoplasts.

Namhyo Kim, Seok-Jun Moon, Myung K Min, Eun-Hye Choi, Jin-Ae Kim, Eun Y Koh, Insun Yoon, Myung-Ok Byun, Sang-Dong Yoo, Beom-Gi Kim

Abstract read
In one paragraph

Article in Frontiers in plant science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

  1. Article
  2. Review
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  4. Article
  5. Genetic diversity of grain yield traits and identification of a grain weight gene SiTGW6 in foxtail millet.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
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  6. Article
  7. Article
  8. Review
  9. Review
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  12. Article
  13. Siberian Wildrye (Plants (Basel, Switzerland) · 2021
    Article
  14. TheInternational journal of molecular sciences · 2021
    Article
  15. Article
  16. Reconstitution of Cytokinin Signaling in Rice Protoplasts.International journal of molecular sciences · 2021
    Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Namhyo KimMolecular Breeding Division, National Academy of Agricultural Science, Rural Development Administration Jeonju, South Korea.
Seok-Jun MoonMolecular Breeding Division, National Academy of Agricultural Science, Rural Development Administration Jeonju, South Korea.
Myung K MinMolecular Breeding Division, National Academy of Agricultural Science, Rural Development Administration Jeonju, South Korea.
Eun-Hye ChoiMolecular Breeding Division, National Academy of Agricultural Science, Rural Development Administration Jeonju, South Korea.
Jin-Ae KimMolecular Breeding Division, National Academy of Agricultural Science, Rural Development Administration Jeonju, South Korea.
Eun Y KohMolecular Breeding Division, National Academy of Agricultural Science, Rural Development Administration Jeonju, South Korea.
Insun YoonMolecular Breeding Division, National Academy of Agricultural Science, Rural Development Administration Jeonju, South Korea.
Myung-Ok ByunMolecular Breeding Division, National Academy of Agricultural Science, Rural Development Administration Jeonju, South Korea.
Sang-Dong YooDepartment of Life Sciences, Korea University Seoul, South Korea.
Beom-Gi KimMolecular Breeding Division, National Academy of Agricultural Science, Rural Development Administration Jeonju, South Korea.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The core components of ABA-dependent gene expression signaling have been identified in Arabidopsis and rice. This signaling pathway consists of four major components; group A OsbZIPs, SAPKs, subclass A OsPP2Cs and OsPYL/RCARs in rice. These might be able to make thousands of combinations through interaction networks resulting in diverse signaling responses. We tried to characterize those gene functions using transient gene expression for rice protoplasts (TGERP) because it is instantaneous and convenient system. Firstly, in order to monitor the ABA signaling output, we developed reporter system named pRab16A-fLUC which consists of Rab16A promoter of rice and luciferase gene. It responses more rapidly and sensitively to ABA than pABRC3-fLUC that consists of ABRC3 of HVA1 promoter in TGERP. We screened the reporter responses for over-expression of each signaling components from group A OsbZIPs to OsPYL/RCARs with or without ABA in TGERP. OsbZIP46 induced reporter most strongly among OsbZIPs tested in the presence of ABA. SAPKs could activate the OsbZIP46 even in the ABA independence. Subclass A OsPP2C6 and -8 almost completely inhibited the OsbZIP46 activity in the different degree through the SAPK9. Lastly, OsPYL/RCAR2 and -5 rescued the OsbZIP46 activity in the presence of SAPK9 and OsPP2C6 dependent on ABA concentration and expression level. By using TGERP, we could characterize successfully the effects of ABA dependent gene expression signaling components in rice. In conclusion, TGERP represents very useful technology to study systemic functional genomics in rice or other monocots.

Indexed as

ABAdual luciferase assayreconstitution of signalingrice protoplasttransient expression

Identifiers

PMID26300907
PMCPMC4524894

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.