Evidence map›Paper›PMID 26300548›Full record

ReviewPigment cell & melanoma research2015

The functional relevance of somatic synonymous mutations in melanoma and other cancers.

Valer Gotea, Jared J Gartner, Nouar Qutob, Laura Elnitski, Yardena Samuels

Abstract readReview
In one paragraph

Review in Pigment cell & melanoma research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Valer GoteaTranslational and Functional Genomics Branch, National Human Genome Research Institute, NIH, Bethesda, MD, USA.
Jared J GartnerSurgery Branch, National Cancer Institute, NIH, Bethesda, MD, USA.
Nouar QutobDepartment of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel.
Laura ElnitskiTranslational and Functional Genomics Branch, National Human Genome Research Institute, NIH, Bethesda, MD, USA.
Yardena SamuelsDepartment of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel.

Funding

Regulatory and epigenetic landscapes reveal biological processes, disease mechanisms and diagnostic markersZIAHG200323 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI ELNITSKI, LAURA L · 2009 to 2025
$27.6M
Intramural NIH HHS ZIA HG200323
6 · The paper itself

Abstract

Recent technological advances in sequencing have flooded the field of cancer research with knowledge about somatic mutations for many different cancer types. Most cancer genomics studies focus on mutations that alter the amino acid sequence, ignoring the potential impact of synonymous mutations. However, accumulating experimental evidence has demonstrated clear consequences for gene function, leading to a widespread recognition of the functional role of synonymous mutations and their causal connection to various diseases. Here, we review the evidence supporting the direct impact of synonymous mutations on gene function via gene splicing; mRNA stability, folding, and translation; protein folding; and miRNA-based regulation of expression. These results highlight the functional contribution of synonymous mutations to oncogenesis and the need to further investigate their detection and prioritization for experimental assessment.

Indexed as

Computational BiologyHumansMelanomaMutationSkin Neoplasmscancergene splicingmelanomamiRNA regulationprotein foldingprotein translationsecondary structuresynonymous mutations

Identifiers

PMID26300548
PMCPMC4834044

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.