Evidence map›Paper›PMID 26300339›Full record

ArticleBiophysical journal2015

Cardiolipin Interactions with Proteins.

Joan Planas-Iglesias, Himal Dwarakanath, Dariush Mohammadyani, Naveena Yanamala, Valerian E Kagan, Judith Klein-Seetharaman

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers.

0numbers the graph read from it
0cells of the map it votes in
79citing papers in PubMed
6.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

79 citing papers in PubMed, 132 citations in OpenAlex.

  1. Review
  2. Article
  3. Functional Cargo in Membrane Vesicles From a Citrus Pathogen.Environmental microbiology reports · 2025
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  13. Article
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  17. Review
  18. Article
  19. Article
  20. CLiB - a novel cardiolipin-binder isolatedRSC chemical biology · 2022
    Article

19 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Joan Planas-IglesiasDivision of Metabolic and Vascular Health, Medical School, University of Warwick, Coventry, United Kingdom.
Himal DwarakanathDivision of Metabolic and Vascular Health, Medical School, University of Warwick, Coventry, United Kingdom.
Dariush MohammadyaniDepartment of Bioengineering, University of Pittsburgh, Pittsburgh, Pennsylvania; Department of Environmental and Occupational Health, University of Pittsburgh, Pittsburgh, Pennsylvania.
Naveena YanamalaDepartment of Environmental and Occupational Health, University of Pittsburgh, Pittsburgh, Pennsylvania.
Valerian E KaganDepartment of Environmental and Occupational Health, University of Pittsburgh, Pittsburgh, Pennsylvania.
Judith Klein-SeetharamanDivision of Metabolic and Vascular Health, Medical School, University of Warwick, Coventry, United Kingdom; Department of Bioengineering, University of Pittsburgh, Pittsburgh, Pennsylvania. Electronic address: j.klein-seetharaman@warwick.ac.uk.
University of Pittsburgh · USUniversity of Warwick · GB

Funding

Training and EducationU19AI068021 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI GREENBERGER, JOEL S · 2005 to 2019
$44.4M
NIAID NIH HHS U19 AI068021NIAID NIH HHS U19AI068021
6 · The paper itself

Abstract

Cardiolipins (CL) represent unique phospholipids of bacteria and eukaryotic mitochondria with four acyl chains and two phosphate groups that have been implicated in numerous functions from energy metabolism to apoptosis. Many proteins are known to interact with CL, and several cocrystal structures of protein-CL complexes exist. In this work, we describe the collection of the first systematic and, to the best of our knowledge, the comprehensive gold standard data set of all known CL-binding proteins. There are 62 proteins in this data set, 21 of which have nonredundant crystal structures with bound CL molecules available. Using binding patch analysis of amino acid frequencies, secondary structures and loop supersecondary structures considering phosphate and acyl chain binding regions together and separately, we gained a detailed understanding of the general structural and dynamic features involved in CL binding to proteins. Exhaustive docking of CL to all known structures of proteins experimentally shown to interact with CL demonstrated the validity of the docking approach, and provides a rich source of information for experimentalists who may wish to validate predictions.

Indexed as

Binding SitesCardiolipinsDatabases, ChemicalHydrophobic and Hydrophilic InteractionsMolecular Docking SimulationProteinsProtein Structure, SecondaryCardiolipinsProteins

Identifiers

PMID26300339
PMCPMC4576322
OpenAlexW1958746655

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.