Evidence map›Paper›PMID 26299963›Full record

ArticleCell reports2015

An Allosteric Interaction Links USP7 to Deubiquitination and Chromatin Targeting of UHRF1.

Zhi-Min Zhang, Scott B Rothbart, David F Allison, Qian Cai, Joseph S Harrison, Lin Li, Yinsheng Wang, Brian D Strahl, Gang Greg Wang, Jikui Song

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
5.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 102 citations in OpenAlex.

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  15. Next-Generation Phage Display to Identify Peptide Ligands of Deubiquitinases.Methods in molecular biology (Clifton, N.J.) · 2023
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1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Zhi-Min ZhangDepartment of Biochemistry, University of California, Riverside, Riverside, CA 92521, USA.
Scott B RothbartCenter for Epigenetics, Van Andel Research Institute, Grand Rapids, MI 49503, USA.
David F AllisonThe Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA.
Qian CaiDepartment of Chemistry, University of California, Riverside, Riverside, CA 92521, USA.
Joseph S HarrisonThe Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA; Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA.
Lin LiDepartment of Chemistry, University of California, Riverside, Riverside, CA 92521, USA.
Yinsheng WangDepartment of Chemistry, University of California, Riverside, Riverside, CA 92521, USA.
Brian D StrahlThe Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA; Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA.
Gang Greg WangThe Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA; Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA.
Jikui SongDepartment of Biochemistry, University of California, Riverside, Riverside, CA 92521, USA. Electronic address: jikui.song@ucr.edu.
University of California, Riverside · USUniversity of North Carolina at Chapel Hill · USVan Andel Institute · US

Funding

Repair of Radiation-Induced Crosslink Lesions of DNAR01ES019873 · NIEHS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI WANG, YINSHENG · 2012 to 2016
$1.5M
Factors that regulate chromatin organization and gene transcriptionR01GM110058 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI STRAHL, BRIAN D · 2014 to 2017
$1.2M
Mechanisms Regulating DNA Methylation Maintenance in ChromatinR00CA181343 · NCI · VAN ANDEL RESEARCH INSTITUTE · PI ROTHBART, SCOTT · 2015 to 2017
$746k
Cancer epigenetics: Understanding histone methylation in leukemia stem cellsR00CA151683 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI WANG, G GREG · 2012 to 2014
$725k
Cancer epigenetics: Understanding histone methylation in leukemia stem cellsK99CA151683 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI WANG, G GREG · 2010 to 2011
$276k
Mechanisms Regulating DNA Methylation Maintenance in ChromatinK99CA181343 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ROTHBART, SCOTT · 2014 to 2015
$211k
NCI NIH HHS CA181343NCI NIH HHS K99 CA151683NCI NIH HHS K99 CA181343NCI NIH HHS K99/R00 CA151683NCI NIH HHS R00 CA151683NCI NIH HHS R00 CA181343NIEHS NIH HHS ES019873NIEHS NIH HHS R01 ES019873NIGMS NIH HHS GM110058NIGMS NIH HHS R01 GM110058
6 · The paper itself

Abstract

The protein stability and chromatin functions of UHRF1 (ubiquitin-like, containing PHD and RING finger domains, 1) are regulated in a cell-cycle-dependent manner. We report a structural characterization of the complex between UHRF1 and the deubiquitinase USP7. The first two UBL domains of USP7 bind to the polybasic region (PBR) of UHRF1, and this interaction is required for the USP7-mediated deubiquitination of UHRF1. Importantly, we find that the USP7-binding site of the UHRF1 PBR overlaps with the region engaging in an intramolecular interaction with the N-terminal tandem Tudor domain (TTD). We show that the USP7-UHRF1 interaction perturbs the TTD-PBR interaction of UHRF1, thereby shifting the conformation of UHRF1 from a TTD-"occluded" state to a state open for multivalent histone binding. Consistently, introduction of a USP7-interaction-defective mutation to UHRF1 significantly reduces its chromatin association. Together, these results link USP7 interaction to the dynamic deubiquitination and chromatin association of UHRF1.

Indexed as

Allosteric SiteUbiquitinationAllosteric RegulationAmino Acid SequenceCCAAT-Enhancer-Binding ProteinsChromatinHEK293 CellsHumansMolecular Sequence DataProtein BindingProtein TransportUbiquitin-Protein LigasesUbiquitin-Specific Peptidase 7Ubiquitin ThiolesteraseCCAAT-Enhancer-Binding ProteinsChromatinUbiquitin-Protein LigasesUbiquitin-Specific Peptidase 7Ubiquitin ThiolesteraseUHRF1 protein, humanUSP7 protein, human

Identifiers

PMID26299963
PMCPMC4558366
OpenAlexW1751741427

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.