Evidence map›Paper›PMID 26299781›Full record

ArticleScientific reports2015

Organic acids from root exudates of banana help root colonization of PGPR strain Bacillus amyloliquefaciens NJN-6.

Jun Yuan, Nan Zhang, Qiwei Huang, Waseem Raza, Rong Li, Jorge M Vivanco, Qirong Shen

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 80 papers.

0numbers the graph read from it
0cells of the map it votes in
80citing papers in PubMed
25.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

80 citing papers in PubMed, 267 citations in OpenAlex.

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  10. Metabolomic Profiling of Tomato Root Exudates Induced byJournal of microbiology and biotechnology · 2025
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  18. Assessing horizontal gene transfer in the rhizosphere ofApplied and environmental microbiology · 2024
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20 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Jun YuanKey Laboratory of Plant Nutrition and Fertilization in Lower-Middle Reaches of the Yangtze River, Ministry of Agriculture; Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization; Nanjing Agricultural University, Nanjing, 210095, China.
Nan ZhangKey Laboratory of Plant Nutrition and Fertilization in Lower-Middle Reaches of the Yangtze River, Ministry of Agriculture; Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization; Nanjing Agricultural University, Nanjing, 210095, China.
Qiwei HuangKey Laboratory of Plant Nutrition and Fertilization in Lower-Middle Reaches of the Yangtze River, Ministry of Agriculture; Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization; Nanjing Agricultural University, Nanjing, 210095, China.
Waseem RazaKey Laboratory of Plant Nutrition and Fertilization in Lower-Middle Reaches of the Yangtze River, Ministry of Agriculture; Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization; Nanjing Agricultural University, Nanjing, 210095, China.
Rong LiKey Laboratory of Plant Nutrition and Fertilization in Lower-Middle Reaches of the Yangtze River, Ministry of Agriculture; Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization; Nanjing Agricultural University, Nanjing, 210095, China.
Jorge M VivancoDepartment of Horticulture and Landscape Architecture and Center for Rhizosphere Biology, Colorado State University, Fort Collins, Colorado 80523.
Qirong ShenKey Laboratory of Plant Nutrition and Fertilization in Lower-Middle Reaches of the Yangtze River, Ministry of Agriculture; Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization; Nanjing Agricultural University, Nanjing, 210095, China.
Ministry of Agriculture · TNColorado State University · USThe Synergetic Innovation Center for Advanced Materials · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The successful colonization of plant growth promoting rhizobacteria (PGPR) in the rhizosphere is an initial and compulsory step in the protection of plants from soil-borne pathogens. Therefore, it is necessary to evaluate the role of root exudates in the colonization of PGPR. Banana root exudates were analyzed by high pressure liquid chromatography (HPLC) which revealed exudates contained several organic acids (OAs) including oxalic, malic and fumaric acid. The chemotactic response and biofilm formation of Bacillus amyloliquefaciens NJN-6 were investigated in response to OA's found in banana root exudates. Furthermore, the transcriptional levels of genes involved in biofilm formation, yqxM and epsD, were evaluated in response to OAs via quantitative reverse transcriptase polymerase chain reaction (qRT-PCR). Results suggested that root exudates containing the OAs both induced the chemotaxis and biofilm formation in NJN-6. In fact, the strongest chemotactic and biofilm response was found when 50 μM of OAs were applied. More specifically, malic acid showed the greatest chemotactic response whereas fumaric acid significantly induced biofilm formation by a 20.7-27.3% increase and therefore biofilm formation genes expression. The results showed banana root exudates, in particular the OAs released, play a crucial role in attracting and initiating PGPR colonization on the host roots.

Indexed as

BacillusBiofilmsCarboxylic AcidsChemotaxisChromatography, High Pressure LiquidColony Count, MicrobialGene Expression Regulation, BacterialGenes, BacterialMusaPlant ExudatesPlant RootsTranscription, GeneticCarboxylic AcidsPlant Exudates

Identifiers

PMID26299781
PMCPMC4547103
OpenAlexW2397739859

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.