Evidence map›Paper›PMID 26296732›Full record

ArticleApplied and environmental microbiology2015

Novel LinA type 3 δ-hexachlorocyclohexane dehydrochlorinase.

Nidhi Shrivastava, Zbynek Prokop, Ashwani Kumar

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
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  5. Article
  6. Article
  7. Article
  8. Article
  9. Degradation study of lindane by novel strainsBioresources and bioprocessing · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Nidhi ShrivastavaAcademy of Scientific and Innovative Research, New Delhi, India Environmental Biotechnology Section, CSIR-Indian Institute of Toxicology Research, Lucknow, India.
Zbynek ProkopLoschmidt Laboratories, Research Centre for Toxic Compounds in the Environment RECETOX, Faculty of Science, Masaryk University, Brno, Czech Republic.
Ashwani KumarAcademy of Scientific and Innovative Research, New Delhi, India Environmental Biotechnology Section, CSIR-Indian Institute of Toxicology Research, Lucknow, India ashwani.iitr26@gmail.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

LinA is the first enzyme of the microbial degradation pathway of a chlorinated insecticide, hexachlorocyclohexane (HCH), and mediates the dehydrochlorination of α-, γ-, and δ-HCH. Its two variants, LinA type 1 and LinA type 2, which differ at 10 out of 156 amino acid residues, have been described. Their activities for the metabolism of different HCH isomers differ considerably but overall are high for γ-HCH, moderate for α-HCH, low for δ-HCH, and lacking for β-HCH. Here, we describe the characterization of a new variant of this enzyme, LinA type 3, whose gene was identified from the metagenome of an HCH-contaminated soil sample. Its deduced primary structure in the region spanning amino acid residues 1 to 147 of the protein exhibits 17 and 12 differences from LinA type 1 and LinA type 2, respectively. In addition, the residues GIHFAPS, present at the region spanning residues 148 to 154 in both LinA type 1 and LinA type 2, are deleted in LinA type 3.The activity of LinA type 3 for the metabolism of δ-HCH is several orders of magnitude higher than that of LinA type 1 or LinA type 2 and can be useful for improvement of the metabolism of δ-HCH.

Indexed as

MetagenomeSoilAmino Acid SequenceBiotransformationHexachlorocyclohexaneInsecticidesKineticsLyasesMolecular Sequence DataSequence Analysis, DNASequence Homology, Amino Aciddehydrochlorinasesdelta-hexachlorocyclohexaneHexachlorocyclohexaneInsecticidesLyasesSoil

Identifiers

PMID26296732
PMCPMC4592873

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.