Evidence map›Paper›PMID 26296208›Full record

ArticlePloS one2015

Structure of the Glycosyltransferase Ktr4p from Saccharomyces cerevisiae.

Dominik D D Possner, Magnus Claesson, Jodie E Guy

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Dominik D D PossnerDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, Tomtebodavägen 6, S 171-77, Stockholm, Sweden.
Magnus ClaessonDepartment of Biochemistry and Biophysics, Stockholm University, Svante Arrhenius väg 16C, S 106-91, Stockholm, Sweden.
Jodie E GuyDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, Tomtebodavägen 6, S 171-77, Stockholm, Sweden.
Karolinska Institutet · SEStockholm University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the yeast Saccharomyces cerevisiae, members of the Kre2/Mnt1 protein family have been shown to be α-1,2-mannosyltransferases or α-1,2-mannosylphosphate transferases, utilising an Mn2+-coordinated GDP-mannose as the sugar donor and a variety of mannose derivatives as acceptors. Enzymes in this family are localised to the Golgi apparatus, and have been shown to be involved in both N- and O-linked glycosylation of newly-synthesised proteins, including cell wall glycoproteins. Our knowledge of the nine proteins in this family is however very incomplete at present. Only one family member, Kre2p/Mnt1p, has been studied by structural methods, and three (Ktr4p, Ktr5p, Ktr7p) are completely uncharacterised and remain classified only as putative glycosyltransferases. Here we use in vitro enzyme activity assays to provide experimental confirmation of the predicted glycosyltransferase activity of Ktr4p. Using GDP-mannose as the donor, we observe activity towards the acceptor methyl-α-mannoside, but little or no activity towards mannose or α-1,2-mannobiose. We also present the structure of the lumenal catalytic domain of S. cerevisiae Ktr4p, determined by X-ray crystallography to a resolution of 2.2 Å, and the complex of the enzyme with GDP to 1.9 Å resolution.

Indexed as

Amino Acid MotifsCatalysisCatalytic DomainCell WallCloning, MolecularCrystallography, X-RayEscherichia coliGene ExpressionGolgi ApparatusGuanosine Diphosphate MannoseKineticsMannansMethylmannosidesModels, MolecularMolecular Sequence DataProtein Structure, SecondaryGuanosine Diphosphate MannoseMannansmannobiosemethylmannosideMethylmannosidesRecombinant ProteinsSaccharomyces cerevisiae ProteinsSMI1 protein, S cerevisiaeTranscription Factors

Identifiers

PMID26296208
PMCPMC4546622
OpenAlexW1962918695

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.