Evidence map›Paper›PMID 26295439›Full record

ArticleHuman mutation2015

The Matchmaker Exchange: a platform for rare disease gene discovery.

Anthony A Philippakis, Danielle R Azzariti, Sergi Beltran, Anthony J Brookes, Catherine A Brownstein, Michael Brudno, Han G Brunner, Orion J Buske, Knox Carey, Cassie Doll and 28 more

Abstract read
In one paragraph

Article in Human mutation, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 313 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
313citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

313 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Review
  4. Article
  5. Arriving at a diagnosis: Effective strategies used by the Undiagnosed Diseases Network.Genetics in medicine : official journal of the American College of Medical Genetics · 2026
    Article
  6. Review
  7. Evidence-based classification of genes implicated in craniosynostosis disorders using the ClinGen curation framework.Genetics in medicine : official journal of the American College of Medical Genetics · 2026
    Article
  8. Review
  9. Collaborative Genomics for Dystonia in Central and Eastern Europe: Successes Achieved, New Frontiers Ahead.Movement disorders : official journal of the Movement Disorder Society · 2026
    Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. GEN-KnowRD: Reframing AI for Rare Disease Recognition.medRxiv : the preprint server for health sciences · 2026
    Article
  16. Article
  17. Clinical,medRxiv : the preprint server for health sciences · 2026
    Article
  18. Article
  19. Article
  20. Review

253 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

38 authors.

Anthony A PhilippakisThe Broad Institute of Harvard and MIT, Cambridge, Massachusetts.
Danielle R AzzaritiLaboratory for Molecular Medicine, Partners Personalized Medicine, Boston, Massachusetts.
Sergi BeltranCentro Nacional de Análisis Genómico, Barcelona, Spain.
Anthony J BrookesDepartment of Genetics, University of Leicester, Leicester, UK.
Catherine A BrownsteinHarvard Medical School, Boston, Massachusetts.
Michael BrudnoDepartment of Computer Science, University of Toronto, Toronto, Canada.
Han G BrunnerRadboud University Medical Center, Department of Human Genetics, Nijmegen 6500 HB, The Netherlands.
Orion J BuskeDepartment of Computer Science, University of Toronto, Toronto, Canada.
Knox CareyGene Cloud, California.
Cassie DollGoogle Inc, Mountain View, California.
Sergiu DumitriuCentre for Computational Medicine, The Hospital for Sick Children, Toronto, Canada.
Stephanie O M DykeCentre of Genomics and Policy, Faculty of Medicine, McGill University, Quebec, Canada.
Johan T den DunnenHuman and Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Helen V FirthEast Anglian Medical Genetics Service, Box 134, Cambridge University Hospitals NHS Foundation Trust, Cambridge Biomedical Campus, Cambridge CB2 0QQ, UK.
Richard A GibbsHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, 77030.
Marta GirdeaDepartment of Computer Science, University of Toronto, Toronto, Canada.
Michael GonzalezThe Genesis Project Inc, Miami, Florida.
Melissa A HaendelDepartment of Medical Informatics and Clinical Epidemiology, Oregon Health & Science University, Portland, Oregon.
Ada HamoshMcKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland.
Ingrid A HolmHarvard Medical School, Boston, Massachusetts.
Lijia HuangThe Children's Hospital of Eastern Ontario Research Institute, Ottawa, Ontario, Canada.
Matthew E HurlesWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SA, UK.
Ben HuttonWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SA, UK.
Joel B KrierHarvard Medical School, Boston, Massachusetts.
Andriy MisyuraCentre for Computational Medicine, The Hospital for Sick Children, Toronto, Canada.
Christopher J MungallGenomics Division, Lawrence Berkeley National Laboratory, Berkeley, California.
Justin PaschallEuropean Molecular Biology Laboratory European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SD, UK.
Benedict PatenUC Santa Cruz Genomics Institute, Santa Cruz, California.
Peter N RobinsonInstitute for Medical Genetics and Human Genetics, Charité-Universitätsmedizin Berlin, Berlin 13353, Germany.
François SchiettecatteFS Consulting LLC, Salem, Massachusetts, 01970.
Nara L SobreiraMcKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland.
Ganesh J SwaminathanWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SA, UK.
Peter E TaschnerHuman and Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Sharon F TerryGenetic Alliance, Washington, District of Columbia.
Nicole L WashingtonDepartment of Cardiology, Brigham & Women's Hospital, Boston, Massachusetts.
Stephan ZüchnerDr. John T. Macdonald Foundation Department of Human Genetics and John P. Hussman Institute for Human Genomics, University of Miami Miller School of Medicine, Miami, Florida.
Kym M BoycottDepartment of Genetics, Children's Hospital of Eastern Ontario, Ottawa, Ontario, Canada.
Heidi L RehmThe Broad Institute of Harvard and MIT, Cambridge, Massachusetts.

Funding

The Human Genome Sequencing CenterU54HG003273 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI GIBBS, RICHARD A · 2004 to 2015
$341.3M
Coordinating Center for the Undiagnosed Diseases NetworkU01HG007530 · NHGRI · HARVARD MEDICAL SCHOOL · PI KOHANE, ISAAC S. · 2014 to 2022
$30.2M
Resource ProjectU41HG006834 · NHGRI · BRIGHAM AND WOMEN'S HOSPITAL · PI REHM, HEIDI L · 2013 to 2020
$26.9M
trainingU54NS065712 · NINDS · WAYNE STATE UNIVERSITY · PI SHY, MICHAEL E. · 2009 to 2023
$19.6M
The Monarch Initiative: Linking Diseases to Model Organism ResourcesR24OD011883 · OD · UNIV OF NORTH CAROLINA CHAPEL HILL · PI HAENDEL, MELISSA A, MUNGALL, CHRISTOPHER J · 2012 to 2024
$16.0M
Baylor-Johns Hopkins Center for Mendelian GeneticsU54HG006542 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2012 to 2015
$15.6M
Training SubprojectU54HG007990 · NHGRI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI HAUSSLER, DAVID H, PATTERSON, DAVID · 2014 to 2018
$14.8M
TRAINING GRANT IN GENETICST32GM007748 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI Anne O'Donnell-Luria, Louise Wilkins-Haug · 1985 to 2026
$12.0M
Center for Integrated Approaches to Undiagnosed DiseasesU01HG007690 · NHGRI · BRIGHAM AND WOMEN'S HOSPITAL · PI LOSCALZO, JOSEPH · 2014 to 2022
$10.4M
GENOME STUDIES IN HEREDITARY SPASTIC PARAPLEGIA - beyond the exomeR01NS072248 · NINDS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI Stephan Zuchner · 2011 to 2026
$9.2M
Genome Sequence-Based Screening for Childhood Risk and Newborn IllnessU19HD077671 · NICHD · BRIGHAM AND WOMEN'S HOSPITAL · PI BEGGS, ALAN H., GREEN, ROBERT C. · 2013 to 2018
$6.1M
Genomic Studies in Charcot-Marie-Tooth DiseaseR01NS075764 · NINDS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI SHY, MICHAEL E., ZUCHNER, STEPHAN · 2012 to 2016
$3.0M
CIHR EP1-120608CIHR EP2-120609NCI NIH HHS N01CO42400-80NHGRI NIH HHS HG007530NHGRI NIH HHS HG007690NHGRI NIH HHS U01 HG007530NHGRI NIH HHS U01 HG007690NHGRI NIH HHS U41 HG006834NHGRI NIH HHS U41HG006834NHGRI NIH HHS U54 HG003273NHGRI NIH HHS U54HG003273NHGRI NIH HHS U54 HG006542NHGRI NIH HHS U54HG006542NHGRI NIH HHS U54 HG007990NHGRI NIH HHS U54HG007990NICHD NIH HHS HD077671NICHD NIH HHS U19 HD077671NIGMS NIH HHS T32 GM007748NIGMS NIH HHS T32GM007748NIH HHS 5R24OD011883NIH HHS R24 OD011883NINDS NIH HHS 5R01NS072248NINDS NIH HHS R01 NS072248NINDS NIH HHS R01 NS075764NINDS NIH HHS R01NS075764NINDS NIH HHS U54 NS065712NINDS NIH HHS U54NS065712Wellcome TrustWellcome Trust WT098051
6 · The paper itself

Abstract

There are few better examples of the need for data sharing than in the rare disease community, where patients, physicians, and researchers must search for "the needle in a haystack" to uncover rare, novel causes of disease within the genome. Impeding the pace of discovery has been the existence of many small siloed datasets within individual research or clinical laboratory databases and/or disease-specific organizations, hoping for serendipitous occasions when two distant investigators happen to learn they have a rare phenotype in common and can "match" these cases to build evidence for causality. However, serendipity has never proven to be a reliable or scalable approach in science. As such, the Matchmaker Exchange (MME) was launched to provide a robust and systematic approach to rare disease gene discovery through the creation of a federated network connecting databases of genotypes and rare phenotypes using a common application programming interface (API). The core building blocks of the MME have been defined and assembled. Three MME services have now been connected through the API and are available for community use. Additional databases that support internal matching are anticipated to join the MME network as it continues to grow.

Indexed as

Database Management SystemsDatabases, GeneticGenetic Association StudiesGenetic Predisposition to DiseaseHumansInformation DisseminationRare DiseasesSoftwareGA4GH, IRDiRCgene discoverygenomic APIMatchmaker Exchangematchmakingrare disease

Identifiers

PMID26295439
PMCPMC4610002

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.