Evidence map›Paper›PMID 26294094›Full record

ArticleHuman mutation2015

Targeted Resequencing of 29 Candidate Genes and Mouse Expression Studies Implicate ZIC3 and FOXF1 in Human VATER/VACTERL Association.

Alina C Hilger, Jan Halbritter, Tracie Pennimpede, Amelie van der Ven, Georgia Sarma, Daniela A Braun, Jonathan D Porath, Stefan Kohl, Daw-Yang Hwang, Gabriel C Dworschak and 7 more

Abstract read
In one paragraph

Article in Human mutation, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
5.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 55 citations in OpenAlex.

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  16. Journal of medical genetics · 2021
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  20. Genetics of atrioventricular canal defects.Italian journal of pediatrics · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 4 countries.

Alina C HilgerInstitute of Human Genetics, University of Bonn, Bonn, Germany.
Jan HalbritterDepartment of Medicine, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts.
Tracie PennimpedeDepartment of Developmental Genetics, Max-Planck-Institute for Molecular Genetics, Berlin, Germany.
Amelie van der VenInstitute of Human Genetics, University of Bonn, Bonn, Germany.
Georgia SarmaDepartment of Neonatology and Pediatric Intensive Care, Children's Hospital, University of Bonn, Bonn, Germany.
Daniela A BraunDepartment of Medicine, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts.
Jonathan D PorathDepartment of Medicine, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts.
Stefan KohlDepartment of Medicine, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts.
Daw-Yang HwangDepartment of Medicine, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts.
Gabriel C DworschakInstitute of Human Genetics, University of Bonn, Bonn, Germany.
Bernhard G HermannDepartment of Developmental Genetics, Max-Planck-Institute for Molecular Genetics, Berlin, Germany.
Anna PavlovaInstitute of Experimental Hematology and Transfusion Medicine, University of Bonn, Bonn, Germany.
Osman El-MaarriInstitute of Experimental Hematology and Transfusion Medicine, University of Bonn, Bonn, Germany.
Markus M NöthenInstitute of Human Genetics, University of Bonn, Bonn, Germany.
Michael LudwigDepartment of Clinical Chemistry and Clinical Pharmacology, University of Bonn, Bonn, Germany.
Heiko ReutterInstitute of Human Genetics, University of Bonn, Bonn, Germany.
Friedhelm HildebrandtDepartment of Medicine, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts.
University of Bonn · DEBoston Children's Hospital · USHarvard University · USMax Planck Institute for Molecular Genetics · DEHoward Hughes Medical Institute · US

Funding

Novel genetics, pathobiology & therapy of nephronophthisis-related ciliopathiesR01DK068306 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HILDEBRANDT, FRIEDHELM · 2004 to 2022
$6.6M
New genes and pathomechanisms of congenital abnormalities of the kidney (CAKUT)R01DK088767 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HILDEBRANDT, FRIEDHELM · 2010 to 2019
$3.4M
NIDDK NIH HHS DK068306NIDDK NIH HHS DK088767NIDDK NIH HHS R01 DK068306NIDDK NIH HHS R01 DK088767
6 · The paper itself

Abstract

The VATER/VACTERL association describes the combination of congenital anomalies including vertebral defects, anorectal malformations, cardiac defects, tracheoesophageal fistula with or without esophageal atresia, renal malformations, and limb defects. As mutations in ciliary genes were observed in diseases related to VATER/VACTERL, we performed targeted resequencing of 25 ciliary candidate genes as well as disease-associated genes (FOXF1, HOXD13, PTEN, ZIC3) in 123 patients with VATER/VACTERL or VATER/VACTERL-like phenotype. We detected no biallelic mutation in any of the 25 ciliary candidate genes; however, identified an identical, probably disease-causing ZIC3 missense mutation (p.Gly17Cys) in four patients and a FOXF1 de novo mutation (p.Gly220Cys) in a further patient. In situ hybridization analyses in mouse embryos between E9.5 and E14.5 revealed Zic3 expression in limb and prevertebral structures, and Foxf1 expression in esophageal, tracheal, vertebral, anal, and genital tubercle tissues, hence VATER/VACTERL organ systems. These data provide strong evidence that mutations in ZIC3 or FOXF1 contribute to VATER/VACTERL.

Indexed as

Genetic Association StudiesAllelesAnal CanalAnimalsAnus, ImperforateCiliaComputational BiologyDNA Mutational AnalysisEsophagusFemaleForkhead Transcription FactorsGenotypeHeart Defects, CongenitalHigh-Throughput Nucleotide SequencingHomeodomain ProteinsHumansForkhead Transcription FactorsFOXF1 protein, humanFoxf1 protein, mouseHomeodomain ProteinsTranscription FactorsZIC3 protein, humanZic3 protein, mouseciliaFOXF1VATER/VACTERL associationZIC3

Identifiers

PMID26294094
PMCPMC4643331
OpenAlexW1838036188

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.