Evidence map›Paper›PMID 26293673›Full record

ArticleOncotarget2015

The proteomic investigation reveals interaction of mdig protein with the machinery of DNA double-strand break repair.

Wei Wang, Yongju Lu, Paul M Stemmer, Xiangmin Zhang, Yongyi Bi, Zhengping Yi, Fei Chen

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Wei WangDepartment of Pharmaceutical Sciences, Eugene Applebaum College of Pharmacy and Health Sciences, Wayne State University, Detroit, MI, USA.
Yongju LuDepartment of Pharmaceutical Sciences, Eugene Applebaum College of Pharmacy and Health Sciences, Wayne State University, Detroit, MI, USA.
Paul M StemmerThe Proteomics Core and Institute of Environmental Health Sciences, School of Medicine, Wayne State University, Detroit, MI, USA.
Xiangmin ZhangDepartment of Pharmaceutical Sciences, Eugene Applebaum College of Pharmacy and Health Sciences, Wayne State University, Detroit, MI, USA.
Yongyi BiSchool of Public Health, Wuhan University, Wuhan, Hubei, P.R. China.
Zhengping YiDepartment of Pharmaceutical Sciences, Eugene Applebaum College of Pharmacy and Health Sciences, Wayne State University, Detroit, MI, USA.
Fei ChenDepartment of Pharmaceutical Sciences, Eugene Applebaum College of Pharmacy and Health Sciences, Wayne State University, Detroit, MI, USA.
Eugene Applebaum College of Pharmacy and Health Sciences · USWayne State University · USWuhan University · CN

Funding

Tumor Biology and Microenvironment (Program 1)P30CA022453 · NCI · WAYNE STATE UNIVERSITY · PI PAUL M STEMMER · 1985 to 2026
$68.4M
Pilot Project ProgramP30ES020957 · NIEHS · WAYNE STATE UNIVERSITY · PI RUNGE-MORRIS, MELISSA A · 2014 to 2021
$10.1M
Human Skeletal Muscle Proteome and Phosphoproteome in Obesity and Type 2 DiabetesR01DK081750 · NIDDK · WAYNE STATE UNIVERSITY · PI YI, ZHENGPING · 2009 to 2017
$3.0M
MicroRNA-190 and Oxidative Stress in Arsenic carcinogenesisR01ES020137 · NIEHS · WAYNE STATE UNIVERSITY · PI CHEN, FEI · 2012 to 2016
$1.7M
Mdig gene and histone demethylation in lung cancerR01ES017217 · NIEHS · WAYNE STATE UNIVERSITY · PI CHEN, FEI · 2009 to 2013
$1.5M
Orbitrap Velos with ETD for Wayne State ProteomicsS10OD010700 · OD · WAYNE STATE UNIVERSITY · PI STEMMER, PAUL M · 2012 to 2012
$575k
NCI NIH HHS P30 CA022453NCI NIH HHS P30 CA22453NIDDK NIH HHS R01 DK081750NIEHS NIH HHS P30 ES020957NIEHS NIH HHS R01 ES017217NIEHS NIH HHS R01 ES020137NIH HHS S10 OD 010700NIH HHS S10 OD010700
6 · The paper itself

Abstract

To investigate how mineral dust-induced gene (mdig, also named as mina53, MINA, or NO52) promotes carcinogenesis through inducing active chromatin, we performed proteomics analyses for the interacting proteins that were co-immunoprecipitated by anti-mdig antibody from either the lung cancer cell line A549 cells or the human bronchial epithelial cell line BEAS-2B cells. On SDS-PAGE gels, three to five unique protein bands were consistently observed in the complexes pulled-down by mdig antibody, but not the control IgG. In addition to the mdig protein, several DNA repair or chromatin binding proteins, including XRCC5, XRCC6, RBBP4, CBX8, PRMT5, and TDRD, were identified in the complexes by the proteomics analyses using both Orbitrap Fusion and Orbitrap XL nanoESI-MS/MS in four independent experiments. The interaction of mdig with some of these proteins was further validated by co-immunoprecipitation using antibodies against mdig and its partner proteins, respectively. These data, thus, provide evidence suggesting that mdig accomplishes its functions on chromatin, DNA repair and cell growth through interacting with the partner proteins.

Indexed as

DNA RepairAmino Acid SequenceAntibiotics, AntineoplasticAntigens, NuclearCell LineCell Line, TumorDioxygenasesDNA-Binding ProteinsDNA Breaks, Double-StrandedDNA HelicasesElectrophoresis, Polyacrylamide GelHistone DemethylasesHumansKu AutoantigenMolecular Sequence DataNuclear ProteinsAntibiotics, AntineoplasticAntigens, NuclearDioxygenasesDNA-Binding ProteinsDNA HelicasesHistone DemethylasesKu AutoantigenNuclear ProteinsPhleomycinsProteomeRBBP4 protein, humanRetinoblastoma-Binding Protein 4RIOX2 protein, humanXRCC5 protein, humanXrcc6 protein, humanDNA repairmdigNHEJXRCC5XRCC6

Identifiers

PMID26293673
PMCPMC4695059
OpenAlexW2251511215

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.