Evidence map›Paper›PMID 26293662›Full record

ArticleHuman molecular genetics2015

Mutations in PIGY: expanding the phenotype of inherited glycosylphosphatidylinositol deficiencies.

Biljana Ilkovski, Alistair T Pagnamenta, Gina L O'Grady, Taroh Kinoshita, Malcolm F Howard, Monkol Lek, Brett Thomas, Anne Turner, John Christodoulou, David Sillence and 14 more

Open access · hybridAbstract readCase Reports
In one paragraph

Article in Human molecular genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed, 1 pooled it
7.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 1 synthesis or guideline pooled it, 73 citations in OpenAlex.

  1. Pooled it
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  20. Copy Number Variation of theAnimals : an open access journal from MDPI · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 12 institutions in 5 countries.

Biljana IlkovskiInstitute for Neuroscience and Muscle Research.
Alistair T PagnamentaNational Institute for Health Research Biomedical Research Centre, Wellcome Trust Centre for Human Genetics, University of Oxford.
Gina L O'GradyInstitute for Neuroscience and Muscle Research, Discipline of Paediatrics and Child Health, University of Sydney, Sydney, NSW, Australia.
Taroh KinoshitaDepartment of Immunoregulation, Research Institute for Microbial Diseases, and WPI Immunology Frontier Research Center, Osaka University, 3-1 Yamadaoka, Suita, Osaka 565-0871, Japan.
Malcolm F HowardNational Institute for Health Research Biomedical Research Centre, Wellcome Trust Centre for Human Genetics, University of Oxford.
Monkol LekAnalytic and Translational Genetics Unit, Massachusetts General Hospital, Boston, MA, USA, Broad Institute of Harvard and Massachusetts Institute of Technology, Cambridge, MA, USA.
Brett ThomasAnalytic and Translational Genetics Unit, Massachusetts General Hospital, Boston, MA, USA, Broad Institute of Harvard and Massachusetts Institute of Technology, Cambridge, MA, USA.
Anne TurnerDepartment of Clinical Genetics, Sydney Children's Hospital, Sydney, NSW, Australia.
John ChristodoulouWestern Sydney Genetics Program, Children's Hospital at Westmead, Westmead, NSW, Australia, Discipline of Genetic Medicine, Children's Hospital at Westmead Clinical School, Sydney, NSW, Australia.
David SillenceWestern Sydney Genetics Program, Children's Hospital at Westmead, Westmead, NSW, Australia, Discipline of Genetic Medicine, Children's Hospital at Westmead Clinical School, Sydney, NSW, Australia.
Samantha J L KnightNational Institute for Health Research Biomedical Research Centre, Wellcome Trust Centre for Human Genetics, University of Oxford.
Niko PopitschNational Institute for Health Research Biomedical Research Centre, Wellcome Trust Centre for Human Genetics, University of Oxford.
David A KeaysInstitute of Molecular Pathology, Vienna 1030, Austria.
Consuelo AnzilottiThe Henry Wellcome Building for Molecular Physiology, University of Oxford, Oxford OX3 7BN, UK.
Anne GorielyWeatherall Institute of Molecular Medicine, University of Oxford, Oxford OX3 9DS, UK.
Leigh B WaddellInstitute for Neuroscience and Muscle Research, Discipline of Paediatrics and Child Health, University of Sydney, Sydney, NSW, Australia.
Fabienne BrilotInstitute for Neuroscience and Muscle Research, Discipline of Paediatrics and Child Health, University of Sydney, Sydney, NSW, Australia.
Kathryn N NorthInstitute for Neuroscience and Muscle Research, Discipline of Paediatrics and Child Health, University of Sydney, Sydney, NSW, Australia, Murdoch Children's Research Institute, The Royal Children's Hospital, Flemington Road, Parkville, VIC, Australia and.
Noriyuki KanzawaDepartment of Immunoregulation, Research Institute for Microbial Diseases, and WPI Immunology Frontier Research Center, Osaka University, 3-1 Yamadaoka, Suita, Osaka 565-0871, Japan.
Daniel G MacarthurAnalytic and Translational Genetics Unit, Massachusetts General Hospital, Boston, MA, USA, Broad Institute of Harvard and Massachusetts Institute of Technology, Cambridge, MA, USA.
Jenny C TaylorNational Institute for Health Research Biomedical Research Centre, Wellcome Trust Centre for Human Genetics, University of Oxford.
Usha KiniDepartment of Clinical Genetics, Oxford University Hospitals NHS Trust, Oxford OX3 9DU, UK nigel.clarke@health.nsw.gov.au Usha.Kini@ouh.nhs.uk.
Yoshiko MurakamiDepartment of Immunoregulation, Research Institute for Microbial Diseases, and WPI Immunology Frontier Research Center, Osaka University, 3-1 Yamadaoka, Suita, Osaka 565-0871, Japan.
Nigel F ClarkeInstitute for Neuroscience and Muscle Research, Discipline of Paediatrics and Child Health, University of Sydney, Sydney, NSW, Australia, nigel.clarke@health.nsw.gov.au Usha.Kini@ouh.nhs.uk.
University of Sydney · AUNational Institute for Health Research · GBOsaka University · JPChildren's Hospital at Westmead · AUUniversity of Oxford · GBBroad Institute · USCentre for Human Genetics · GBMassachusetts General Hospital · USMassachusetts Institute of Technology · USOxford University Hospitals NHS Trust · GBResearch Institute of Molecular Pathology · ATSydney Children's Hospital · AU

Funding

Medical Research Council G0900747Medical Research Council G0900747 91070Wellcome Trust 090532/Z/09/ZWellcome Trust 102731/Z/13/Z
6 · The paper itself

Abstract

Glycosylphosphatidylinositol (GPI)-anchored proteins are ubiquitously expressed in the human body and are important for various functions at the cell surface. Mutations in many GPI biosynthesis genes have been described to date in patients with multi-system disease and together these constitute a subtype of congenital disorders of glycosylation. We used whole exome sequencing in two families to investigate the genetic basis of disease and used RNA and cellular studies to investigate the functional consequences of sequence variants in the PIGY gene. Two families with different phenotypes had homozygous recessive sequence variants in the GPI biosynthesis gene PIGY. Two sisters with c.137T>C (p.Leu46Pro) PIGY variants had multi-system disease including dysmorphism, seizures, severe developmental delay, cataracts and early death. There were significantly reduced levels of GPI-anchored proteins (CD55 and CD59) on the surface of patient-derived skin fibroblasts (∼20-50% compared with controls). In a second, consanguineous family, two siblings had moderate development delay and microcephaly. A homozygous PIGY promoter variant (c.-540G>A) was detected within a 7.7 Mb region of autozygosity. This variant was predicted to disrupt a SP1 consensus binding site and was shown to be associated with reduced gene expression. Mutations in PIGY can occur in coding and non-coding regions of the gene and cause variable phenotypes. This article contributes to understanding of the range of disease phenotypes and disease genes associated with deficiencies of the GPI-anchor biosynthesis pathway and also serves to highlight the potential importance of analysing variants detected in 5'-UTR regions despite their typically low coverage in exome data.

Indexed as

MutationCD55 AntigensCD59 AntigensCell Line, TumorChild, PreschoolDNA Mutational AnalysisFemaleGene ExpressionGlycosylphosphatidylinositolsHumansInfantInfant, NewbornMaleMembrane ProteinsPhenotypeSeizuresCD55 AntigensCD59 AntigensGlycosylphosphatidylinositolsMembrane ProteinsPIGY protein, human

Identifiers

PMID26293662
PMCPMC4599673
OpenAlexW1821623006

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.