Evidence map›Paper›PMID 26292085›Full record

ArticlePLoS genetics2015

Loss and Gain of Natural Killer Cell Receptor Function in an African Hunter-Gatherer Population.

Hugo G Hilton, Paul J Norman, Neda Nemat-Gorgani, Ana Goyos, Jill A Hollenbach, Brenna M Henn, Christopher R Gignoux, Lisbeth A Guethlein, Peter Parham

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
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  9. Review
  10. Following Transplantation for Acute Myelogenous Leukemia, DonorJournal of immunology (Baltimore, Md. : 1950) · 2021
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Single Nucleotide Polymorphism inFrontiers in immunology · 2020
    Article
  16. Review
  17. Human NK cell receptor KIR2DS4 detects a conserved bacterial epitope presented by HLA-C.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Hugo G HiltonDepartments of Structural Biology and Microbiology & Immunology, Stanford University School of Medicine, Stanford, California, United States of America.
Paul J NormanDepartments of Structural Biology and Microbiology & Immunology, Stanford University School of Medicine, Stanford, California, United States of America.
Neda Nemat-GorganiDepartments of Structural Biology and Microbiology & Immunology, Stanford University School of Medicine, Stanford, California, United States of America.
Ana GoyosDepartments of Structural Biology and Microbiology & Immunology, Stanford University School of Medicine, Stanford, California, United States of America.
Jill A HollenbachDepartment of Neurology, University of California, San Francisco, California, United States of America.
Brenna M HennDepartment of Ecology and Evolution, Stony Brook University, Stony Brook, New York, United States of America.
Christopher R GignouxDepartment of Genetics, Stanford University School of Medicine, Stanford, California, United States of America.
Lisbeth A GuethleinDepartments of Structural Biology and Microbiology & Immunology, Stanford University School of Medicine, Stanford, California, United States of America.
Peter ParhamDepartments of Structural Biology and Microbiology & Immunology, Stanford University School of Medicine, Stanford, California, United States of America.
Stanford University · USStony Brook University · USUniversity of California, San Francisco · US

Funding

Spectrum Stanford Center for clinical and Translational Research and EducationUL1TR001085 · NCATS · STANFORD UNIVERSITY · PI CULLEN, MARK RICHARD, GREENBERG, HARRY BERNARD · 2013 to 2017
$37.1M
MOLECULAR &CELLULAR IMMUNOBIOLOGYT32AI007290 · NIAID · STANFORD UNIVERSITY · PI Sean Curtis Bendall, Olivia M Martinez · 1985 to 2026
$27.0M
Stanford Center for Clinical and Translational Education and Research (SCCTER)UL1UL1RR025744 · NCRR · STANFORD UNIVERSITY · PI GREENBERG, HARRY BERNARD · 2008 to 2011
$22.4M
Insights Into Immune-Related Diseases Born from Population GenomicsU01AI090905 · NIAID · UNIVERSITY OF COLORADO DENVER · PI Paul John Norman · 2010 to 2026
$10.9M
STRUCTURAL BIOLOGY OF HLA-A,B ANTIGENSR01AI017892 · NIAID · STANFORD UNIVERSITY · PI PARHAM, PETER R · 1985 to 2019
$6.1M
INTERACTIONS BETWEEN HLA CLASS I &CYTOLYTIC LYMPHOCYTESR01AI022039 · NIAID · STANFORD UNIVERSITY · PI PARHAM, PETER R · 1985 to 2017
$5.2M
Integrated Exchange & Storage of Current and Future-Generation Immunogenomic DataR01GM109030 · NIGMS · CHILDREN'S HOSPITAL & RES CTR AT OAKLAND · PI HOLLENBACH, JILL ALLISON, MACK, STEVEN JOHN · 2014 to 2016
$919k
STRUCTURAL BIOLOGY OF HLA-A/B ANTIGENSR37AI017892 · NIAID · STANFORD UNIVERSITY · PI PARHAM, PETER R · 1989 to 1998
–
NCATS NIH HHS UL1 TR001085NCRR NIH HHS UL1 RR025744NCRR NIH HHS ULI RR025744NIAID NIH HHS AI090905NIAID NIH HHS AI17892NIAID NIH HHS R01 AI017892NIAID NIH HHS R01 AI022039NIAID NIH HHS T32 AI007290NIAID NIH HHS U01 AI090905NIGMS NIH HHS GM109030NIGMS NIH HHS R01 GM109030
6 · The paper itself

Abstract

Modulating natural killer cell functions in human immunity and reproduction are diverse interactions between the killer cell immunoglobulin-like receptors (KIR) of Natural Killer (NK) cells and HLA class I ligands on the surface of tissue cells. Dominant interactions are between KIR2DL1 and the C2 epitope of HLA-C and between KIR2DL2/3 and the C1 epitope of HLA-C. KhoeSan hunter-gatherers of Southern Africa represent the earliest population divergence known and are the most genetically diverse indigenous people, qualities reflected in their KIR and HLA genes. Of the ten KhoeSan KIR2DL1 alleles, KIR2DL1*022 and KIR2DL1*026 likely originated in the KhoeSan, and later were transmitted at low frequency to the neighboring Zulus through gene flow. These alleles arose by point mutation from other KhoeSan KIR2DL1 alleles that are more widespread globally. Mutation of KIR2DL1*001 gave rise to KIR2DL1*022, causing loss of C2 recognition and gain of C1 recognition. This makes KIR2DL1*022 a more avid and specific C1 receptor than any KIR2DL2/3 allotype. Mutation of KIR2DL1*012 gave rise to KIR2DL1*026, causing premature termination of translation at the end of the transmembrane domain. This makes KIR2DL1*026 a membrane-associated receptor that lacks both a cytoplasmic tail and signaling function. At higher frequencies than their parental allotypes, the combined effect of the KhoeSan-specific KIR2DL1*022 and KIR2DL1*026 is to reduce the frequency of strong inhibitory C2 receptors and increase the frequency of strong inhibitory C1 receptors. Because interaction of KIR2DL1 with C2 is associated with risk of pregnancy disorder, these functional changes are potentially advantageous. Whereas all other KhoeSan KIR2DL1 alleles are present on a wide diversity of centromeric KIR haplotypes, KIR2DL1*026 is present on a single KIR haplotype and KIR2DL1*022 is present on two very similar haplotypes. The high linkage disequilibrium across their haplotypes is consistent with a recent emergence for these KIR2DL1 alleles that have distinctive functions.

Indexed as

AllelesEvolution, MolecularGenetic Association StudiesGenetics, MedicalHaplotypesHeLa CellsHumansKiller Cells, NaturalLinkage DisequilibriumPolymorphism, GeneticReceptors, KIR2DL1Signal TransductionSouth AfricaKIR2DL1 protein, humanReceptors, KIR2DL1

Identifiers

PMID26292085
PMCPMC4546388
OpenAlexW1166860901

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.