Evidence map›Paper›PMID 26291447›Full record

ArticlePloS one2015

Rapid, Precise, and Accurate Counts of Symbiodinium Cells Using the Guava Flow Cytometer, and a Comparison to Other Methods.

Cory J Krediet, Jan C DeNofrio, Carlo Caruso, Matthew S Burriesci, Kristen Cella, John R Pringle

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.4field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 73 citations in OpenAlex.

  1. Article
  2. Article
  3. Photosynthesis and other factors affecting the establishment and maintenance of cnidarian-dinoflagellate symbiosis.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
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  4. Growth and Cell Size of MicroalgaMicroorganisms · 2024
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  12. Insights into coral bleaching under heat stress from analysis of gene expression in a sea anemone model system.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  13. Article
  14. Article
  15. Article
  16. Cell Cytometry: Review and Perspective on Biotechnological Advances.Frontiers in bioengineering and biotechnology · 2019
    Review
  17. Article
  18. Trace Metal Requirements and Interactions inFrontiers in microbiology · 2018
    Article
  19. Article
  20. The genomics of recovery from coral bleaching.Proceedings. Biological sciences · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Cory J KredietDepartment of Genetics, Stanford University School of Medicine, Stanford, California, United States of America.
Jan C DeNofrioDepartment of Genetics, Stanford University School of Medicine, Stanford, California, United States of America.
Carlo CarusoDepartment of Genetics, Stanford University School of Medicine, Stanford, California, United States of America.
Matthew S BurriesciDepartment of Genetics, Stanford University School of Medicine, Stanford, California, United States of America.
Kristen CellaDepartment of Genetics, Stanford University School of Medicine, Stanford, California, United States of America.
John R PringleDepartment of Genetics, Stanford University School of Medicine, Stanford, California, United States of America.
Stanford University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In studies of both the establishment and breakdown of cnidarian-dinoflagellate symbiosis, it is often necessary to determine the number of Symbiodinium cells relative to the quantity of host tissue. Ideally, the methods used should be rapid, precise, and accurate. In this study, we systematically evaluated methods for sample preparation and storage and the counting of algal cells using the hemocytometer, a custom image-analysis program for automated counting of the fluorescent algal cells, the Coulter Counter, or the Millipore Guava flow-cytometer. We found that although other methods may have value in particular applications, for most purposes, the Guava flow cytometer provided by far the best combination of precision, accuracy, and efficient use of investigator time (due to the instrument's automated sample handling), while also allowing counts of algal numbers over a wide range and in small volumes of tissue homogenate. We also found that either of two assays of total homogenate protein provided a precise and seemingly accurate basis for normalization of algal counts to the total amount of holobiont tissue.

Indexed as

AnimalsCnidariaDinoflagellidaFlow CytometrySymbiosis

Identifiers

PMID26291447
PMCPMC4546242
OpenAlexW1914423079

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.