Evidence map›Paper›PMID 26290570›Full record

ArticleG3 (Bethesda, Md.)2015

SUMO-Enriched Proteome for Drosophila Innate Immune Response.

Mithila Handu, Bhagyashree Kaduskar, Ramya Ravindranathan, Amarendranath Soory, Ritika Giri, Vijay Barathi Elango, Harsha Gowda, Girish S Ratnaparkhi

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Ubiquitin-proteasome pathway annotation inGigaByte (Hong Kong, China) · 2022
    Article
  5. Review
  6. Review
  7. SUMOylation of Arginyl tRNA Synthetase Modulates theFrontiers in cell and developmental biology · 2021
    Article
  8. Article
  9. Article
  10. Caspar SUMOylation regulatesmicroPublication biology · 2020
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Mithila HanduIndian Institute of Science Education and Research, Pune, India.
Bhagyashree KaduskarIndian Institute of Science Education and Research, Pune, India.
Ramya RavindranathanIndian Institute of Science Education and Research, Pune, India.
Amarendranath SooryIndian Institute of Science Education and Research, Pune, India.
Ritika GiriIndian Institute of Science Education and Research, Pune, India.
Vijay Barathi ElangoIndian Institute of Science Education and Research, Pune, India.
Harsha GowdaInstitute of Bioinformatics, 566 066 Bangalore, India.
Girish S RatnaparkhiIndian Institute of Science Education and Research, Pune, India girish@iiserpune.ac.in girish.iiserpune@gmail.com.ORCID http://orcid.org/0000-0001-7615-3140
Indian Institute of Science Education and Research Pune · INInstitute of Bioinformatics · IN

Funding

Wellcome Trust
6 · The paper itself

Abstract

Small ubiquitin-like modifier (SUMO) modification modulates the expression of defense genes in Drosophila, activated by the Toll/nuclear factor-κB and immune-deficient/nuclear factor-κB signaling networks. We have, however, limited understanding of the SUMO-modulated regulation of the immune response and lack information on SUMO targets in the immune system. In this study, we measured the changes to the SUMO proteome in S2 cells in response to a lipopolysaccharide challenge and identified 1619 unique proteins in SUMO-enriched lysates. A confident set of 710 proteins represents the immune-induced SUMO proteome and analysis suggests that specific protein domains, cellular pathways, and protein complexes respond to immune stress. A small subset of the confident set was validated by in-bacto SUMOylation and shown to be bona-fide SUMO targets. These include components of immune signaling pathways such as Caspar, Jra, Kay, cdc42, p38b, 14-3-3ε, as well as cellular proteins with diverse functions, many being components of protein complexes, such as prosß4, Rps10b, SmD3, Tango7, and Aats-arg. Caspar, a human FAF1 ortholog that negatively regulates immune-deficient signaling, is SUMOylated at K551 and responds to treatment with lipopolysaccharide in cultured cells. Our study is one of the first to describe SUMO proteome for the Drosophila immune response. Our data and analysis provide a global framework for the understanding of SUMO modification in the host response to pathogens.

Indexed as

Immunity, InnateProteomeProteomicsSumoylationAmino Acid SequenceAnimalsCell LineDrosophilaDrosophila ProteinsHumansMolecular Sequence DataProtein BindingProtein Interaction MappingProtein Interaction MapsReproducibility of ResultsSequence AlignmentDrosophila ProteinsProteomeimmunityNF-kappaBproteomeregulationsignalingSUMO

Identifiers

PMID26290570
PMCPMC4592996
OpenAlexW1846358663

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.