Evidence map›Paper›PMID 26289479›Full record

ArticleNature communications2015

Structural mechanism for signal transduction in RXR nuclear receptor heterodimers.

Douglas J Kojetin, Edna Matta-Camacho, Travis S Hughes, Sathish Srinivasan, Jerome C Nwachukwu, Valerie Cavett, Jason Nowak, Michael J Chalmers, David P Marciano, Theodore M Kamenecka and 5 more

Abstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. The role of HNF4α in adenocarcinoma.Biochemical Society transactions · 2026
    Review
  5. Review
  6. Article
  7. Article
  8. Hepatocyte Nuclear Factor 4 Alpha: A Key Regulator of Liver Disease Pathology and Haemostatic Disorders.Liver international : official journal of the International Association for the Study of the Liver · 2025
    Review
  9. Article
  10. Article
  11. Article
  12. Asymmetric allostery in estrogen receptor-α homodimers drives responses to the ensemble of estrogens in the hormonal milieu.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article

15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Douglas J KojetinDepartment of Molecular Therapeutics, The Scripps Research Institute-Scripps Florida, 130 Scripps Way, Jupiter, Florida 33458, USA.
Edna Matta-CamachoDepartment of Molecular Therapeutics, The Scripps Research Institute-Scripps Florida, 130 Scripps Way, Jupiter, Florida 33458, USA.
Travis S HughesDepartment of Molecular Therapeutics, The Scripps Research Institute-Scripps Florida, 130 Scripps Way, Jupiter, Florida 33458, USA.
Sathish SrinivasanDepartment of Cancer Biology, The Scripps Research Institute-Scripps Florida, 130 Scripps Way, Jupiter, Florida 33458, USA.
Jerome C NwachukwuDepartment of Cancer Biology, The Scripps Research Institute-Scripps Florida, 130 Scripps Way, Jupiter, Florida 33458, USA.
Valerie CavettDepartment of Cancer Biology, The Scripps Research Institute-Scripps Florida, 130 Scripps Way, Jupiter, Florida 33458, USA.
Jason NowakDepartment of Cancer Biology, The Scripps Research Institute-Scripps Florida, 130 Scripps Way, Jupiter, Florida 33458, USA.
Michael J ChalmersDepartment of Molecular Therapeutics, The Scripps Research Institute-Scripps Florida, 130 Scripps Way, Jupiter, Florida 33458, USA.
David P MarcianoDepartment of Molecular Therapeutics, The Scripps Research Institute-Scripps Florida, 130 Scripps Way, Jupiter, Florida 33458, USA.
Theodore M KameneckaDepartment of Molecular Therapeutics, The Scripps Research Institute-Scripps Florida, 130 Scripps Way, Jupiter, Florida 33458, USA.
Andrew I ShulmanDepartment of Pharmacology, University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA.
Mark RanceDepartment of Molecular Genetics, Biochemistry and Microbiology, University of Cincinnati, Cincinnati, Ohio 45267, USA.
Patrick R GriffinDepartment of Molecular Therapeutics, The Scripps Research Institute-Scripps Florida, 130 Scripps Way, Jupiter, Florida 33458, USA.
John B BruningSchool of Biological Sciences, The University of Adelaide, Adelaide, South Australia 5005, Australia.
Kendall W NettlesDepartment of Cancer Biology, The Scripps Research Institute-Scripps Florida, 130 Scripps Way, Jupiter, Florida 33458, USA.

Funding

UHTS Implementation(Florida)U54MH084512 · NIMH · SCRIPPS RESEARCH INSTITUTE, THE · PI DING, SHENG · 2008 to 2013
$89.2M
Molecular Characterization of Novel Insulin SensitizersR01DK105825 · NIDDK · SCRIPPS FLORIDA · PI GRIFFIN, PATRICK ROBERT · 2015 to 2019
$2.9M
Protein Dynamics in Homeodomain/DNA ComplexesR01GM063855 · NIGMS · UNIVERSITY OF CINCINNATI · PI RANCE, MARK A · 2003 to 2012
$2.6M
Structure and Function of Alternate-Site Binding of Anti-Diabetic PPARG LigandsR01DK101871 · NIDDK · SCRIPPS FLORIDA · PI KOJETIN, DOUGLAS · 2014 to 2018
$2.1M
Development of H/D exchange technology for the study of large protein complexesR01GM084041 · NIGMS · SCRIPPS FLORIDA · PI GRIFFIN, PATRICK ROBERT · 2009 to 2012
$1.6M
Structural mechanism and function of endogenous ligands targeting orphan NR4A receptorsR01GM114420 · NIGMS · SCRIPPS FLORIDA · PI KOJETIN, DOUGLAS · 2015 to 2018
$1.5M
Molecular Analysis of Steroid Hormone Receptors with X-ray CrystallographyR33CA132022 · NCI · SCRIPPS RESEARCH INSTITUTE, THE · PI NETTLES, KENDALL W · 2008 to 2010
$1.1M
Connecting the functional effects of drugs to how they change PPAR gammaR00DK103116 · NIDDK · UNIVERSITY OF MONTANA · PI HUGHES, TRAVIS SHANE · 2016 to 2018
$727k
Acquisition of a LTQ/Orbitrap MS to advance the study of protein dynamicsS10RR027270 · NCRR · SCRIPPS RESEARCH INSTITUTE, THE · PI GRIFFIN, PATRICK ROBERT · 2010 to 2010
$500k
800 MHz NMR console replacementS10RR027755 · NCRR · UNIVERSITY OF CINCINNATI · PI RANCE, MARK A · 2010 to 2010
$358k
CRYOPROBE FOR 800 MHZ NMR SPECT: STRUC BIOL: BACTERIAL PROTEINS, CARDIAC MUSCLE S10RR019077 · NCRR · UNIVERSITY OF CINCINNATI · PI RANCE, MARK A · 2004 to 2004
$345k
Connecting the functional effects of drugs to how they change PPAR gammaK99DK103116 · NIDDK · SCRIPPS FLORIDA · PI HUGHES, TRAVIS SHANE · 2014 to 2015
$178k
NCI NIH HHS CA132022NCI NIH HHS R33 CA132022NCRR NIH HHS RR019077NCRR NIH HHS RR027270NCRR NIH HHS RR027755NCRR NIH HHS S10 RR019077NCRR NIH HHS S10 RR027270NCRR NIH HHS S10 RR027755NIDDK NIH HHS DK097890NIDDK NIH HHS DK101871NIDDK NIH HHS DK103116NIDDK NIH HHS F32 DK097890NIDDK NIH HHS K99 DK103116NIDDK NIH HHS R00 DK103116NIDDK NIH HHS R01 DK101871NIDDK NIH HHS R01 DK105825NIGMS NIH HHS GM063855NIGMS NIH HHS GM084041NIGMS NIH HHS GM114420NIGMS NIH HHS R01 GM063855NIGMS NIH HHS R01 GM084041NIGMS NIH HHS R01 GM114420NIMH NIH HHS MH084512NIMH NIH HHS U54 MH084512
6 · The paper itself

Abstract

A subset of nuclear receptors (NRs) function as obligate heterodimers with retinoid X receptor (RXR), allowing integration of ligand-dependent signals across the dimer interface via an unknown structural mechanism. Using nuclear magnetic resonance (NMR) spectroscopy, x-ray crystallography and hydrogen/deuterium exchange (HDX) mass spectrometry, here we show an allosteric mechanism through which RXR co-operates with a permissive dimer partner, peroxisome proliferator-activated receptor (PPAR)-γ, while rendered generally unresponsive by a non-permissive dimer partner, thyroid hormone (TR) receptor. Amino acid residues that mediate this allosteric mechanism comprise an evolutionarily conserved network discovered by statistical coupling analysis (SCA). This SCA network acts as a signalling rheostat to integrate signals between dimer partners, ligands and coregulator-binding sites, thereby affecting signal transmission in RXR heterodimers. These findings define rules guiding how NRs integrate two ligand-dependent signalling pathways into RXR heterodimer-specific responses.

Indexed as

AnimalsCell LineCloning, MolecularCrystallography, X-RayGene Expression RegulationHumansMagnetic Resonance SpectroscopyModels, MolecularPPAR gammaProtein ConformationReceptors, Thyroid HormoneRetinoid X Receptor alphaSignal TransductionPPAR gammaReceptors, Thyroid HormoneRetinoid X Receptor alpha

Identifiers

PMID26289479
PMCPMC4547401

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.