Evidence map›Paper›PMID 26289416›Full record

ArticleInternational journal of legal medicine2016

Whole mitochondrial genome genetic diversity in an Estonian population sample.

Monika Stoljarova, Jonathan L King, Maiko Takahashi, Anu Aaspõllu, Bruce Budowle

Abstract read
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In one paragraph

Article in International journal of legal medicine, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 43 citations in OpenAlex.

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  6. Association of whole mtDNA, an NADPH G11914A variant, and haplogroups with high physical performance in an elite military troop.Brazilian journal of medical and biological research = Revista brasileira de pesquisas medicas e biologica · 2021
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  14. Whole mitochondrial genome diversity in two Hungarian populations.Molecular genetics and genomics : MGG · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Monika StoljarovaDepartment of Gene Technology, Tallinn University of Technology, Akadeemia tee 15A-604, Tallinn, 12618, Estonia. monika.stoljarova@ttu.ee.ORCID http://orcid.org/0000-0001-5263-8020
Jonathan L KingInstitute of Applied Genetics, Department of Molecular and Medical Genetics, University of North Texas Health Science Center, 3500 Camp Bowie Blvd., Fort Worth, TX, 76107, USA.
Maiko TakahashiInstitute of Applied Genetics, Department of Molecular and Medical Genetics, University of North Texas Health Science Center, 3500 Camp Bowie Blvd., Fort Worth, TX, 76107, USA.
Anu AaspõlluDepartment of Gene Technology, Tallinn University of Technology, Akadeemia tee 15A-604, Tallinn, 12618, Estonia.
Bruce BudowleInstitute of Applied Genetics, Department of Molecular and Medical Genetics, University of North Texas Health Science Center, 3500 Camp Bowie Blvd., Fort Worth, TX, 76107, USA.
University of North Texas · USTallinn University of Technology · EE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mitochondrial DNA is a useful marker for population studies, human identification, and forensic analysis. Commonly used hypervariable regions I and II (HVI/HVII) were reported to contain as little as 25% of mitochondrial DNA variants and therefore the majority of power of discrimination of mitochondrial DNA resides in the coding region. Massively parallel sequencing technology enables entire mitochondrial genome sequencing. In this study, buccal swabs were collected from 114 unrelated Estonians and whole mitochondrial genome sequences were generated using the Illumina MiSeq system. The results are concordant with previous mtDNA control region reports of high haplogroup HV and U frequencies (47.4 and 23.7% in this study, respectively) in the Estonian population. One sample with the Northern Asian haplogroup D was detected. The genetic diversity of the Estonian population sample was estimated to be 99.67 and 95.85%, for mtGenome and HVI/HVII data, respectively. The random match probability for mtGenome data was 1.20 versus 4.99% for HVI/HVII. The nucleotide mean pairwise difference was 27 ± 11 for mtGenome and 7 ± 3 for HVI/HVII data. These data describe the genetic diversity of the Estonian population sample and emphasize the power of discrimination of the entire mitochondrial genome over the hypervariable regions.

Indexed as

Genetics, PopulationGenetic VariationDNA, MitochondrialEstoniaGenome, MitochondrialHaplotypesHumansSequence AnalysisDNA, MitochondrialEstoniaHaplogroupIllumina MiSeqMassively parallel sequencing (MPS)Mitochondrial genome (mtGenome)Power of discrimination

Identifiers

PMID26289416
OpenAlexW1142506706

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.