Evidence map›Paper›PMID 26289300›Full record

ArticleMolecular biotechnology2015

Investigation and Expression of the Secoisolariciresinol Dehydrogenase Gene Involved in Podophyllotoxin Biosynthesis.

Sonja L B Arneaud, John R Porter

Abstract read
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In one paragraph

Article in Molecular biotechnology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.2field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Identification and investigation of a novel NADPFrontiers in plant science · 2022
    Article
  5. Review
  6. Studies in mycology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Sonja L B ArneaudDepartment of Biological Sciences, University of the Sciences, 600 South 43rd Street, Philadelphia, PA, 19104, USA. sarneaud@mail.usciences.edu.
John R PorterDepartment of Biological Sciences, University of the Sciences, 600 South 43rd Street, Philadelphia, PA, 19104, USA. j.porter@usciences.edu.ORCID http://orcid.org/0000-0001-8332-7313
University of the Sciences · US

Funding

NCI NIH HHS 1R15CA135589-01A1
6 · The paper itself

Abstract

Podophyllotoxin (PPT) is a plant natural product that serves as a precursor for the synthesis of many well-known chemotherapeutic drugs. The limited availability and high demand for the source plants of PPT have led to the exploration of alternative sources for this compound. In this study, we utilized the endophytic fungus Phialocephala podophylli (strain PPE7) that we isolated from the rhizomes of Podophyllum peltatum and is known to produce detectable amounts of PPT in broth culture. To date, the complete PPT biosynthetic pathway has yet to be determined in any species. Since fungi are well known for clustering genes that belong to secondary metabolite pathways, use of a fungal system for investigation of the PPT biosynthesis genes may ultimately lead to elucidation of the entire pathway. In this study, we investigated the secoisolariciresinol dehydrogenase (SD) gene that facilitates the dehydrogenation of secoisolariciresinol to form matairesinol, a mid-pathway intermediate product in PPT biosynthesis. We utilized PCR amplification to acquire the complete SD gene sequence in PPE7 and opted to synthesize the P. peltatum SD sequence for expression. Through western blotting, we confirmed the expression of the recombinant SD (PpSD) and verified protein functionality with a bioconversion assay followed by HPLC and LC-MS analyses. Here, we report the identification of the SD gene in PPE7; this is the first report of the SD gene in an endophytic fungus. Additionally, we established the groundwork for the future expression of the complete PPT biosynthetic pathway in the heterologous host Pichia pastoris.

Indexed as

Amino Acid SequenceAscomycotaBase SequenceBiosynthetic PathwaysCloning, MolecularCulture MediaDNA, FungalFungal ProteinsMolecular Sequence DataNAD (+) and NADP (+) Dependent Alcohol OxidoreductasesPodophyllotoxinPodophyllum peltatumProtein ConformationSequence Analysis, DNACulture MediaDNA, FungalFungal ProteinsNAD (+) and NADP (+) Dependent Alcohol OxidoreductasesPodophyllotoxinsecoisolariciresinol dehydrogenaseHeterologous expressionPhialocephala podophylliPichia pastorisPodophyllotoxin biosynthesisPodophyllum peltatumSecoisolariciresinol dehydrogenaseSecondary metabolite

Identifiers

PMID26289300
OpenAlexW1165806688

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.