Evidence map›Paper›PMID 26288847›Full record

ArticleEBioMedicine2015

TYK2 Promoter Variant and Diabetes Mellitus in the Japanese.

Seiho Nagafuchi, Yumi Kamada-Hibio, Kanako Hirakawa, Nobutaka Tsutsu, Masae Minami, Akira Okada, Katsuya Kai, Miho Teshima, Arisa Moroishi, Yoshikazu Murakami and 26 more

Open access · goldAbstract read
In one paragraph

Article in EBioMedicine, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 1 pooled it
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 1 synthesis or guideline pooled it, 41 citations in OpenAlex.

  1. Pooled it
  2. Genes · 2021
    Trial
  3. Article
  4. The Functions of SARS-CoV-2 Receptors in Diabetes-Related Severe COVID-19.International journal of molecular sciences · 2024
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Review
  18. Article
  19. A Case of Fulminant Type 1 Diabetes with Gastric and Urinary Retention.Diabetes therapy : research, treatment and education of diabetes and related disorders · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

36 authors at 10 institutions in 1 country.

Seiho NagafuchiDepartment of Medical Science and Technology, Graduate School of Medical Sciences, Kyushu University, Fukuoka 812-8582, Japan ; Department of Medicine and Biosystemic Science, Graduate School of Medical Sciences, Kyushu University, Fukuoka 812-8582, Japan ; Department of Internal Medicine, Sawara Hospital, Sawara, Fukuoka 819-0002, Japan.
Yumi Kamada-HibioDepartment of Medical Science and Technology, Graduate School of Medical Sciences, Kyushu University, Fukuoka 812-8582, Japan.
Kanako HirakawaDepartment of Medical Science and Technology, Graduate School of Medical Sciences, Kyushu University, Fukuoka 812-8582, Japan.
Nobutaka TsutsuDepartment of Diabetes and Metabolism, Fukuoka Red Cross Hospital, Fukuoka 815-8555, Japan.
Masae MinamiMinami Masae Naika Clinic, Fukuoka 815-0071, Japan.
Akira OkadaOkada Naika Clinic, Fukuoka 812-0053, Japan.
Katsuya KaiDepartment of Medical Science and Technology, Graduate School of Medical Sciences, Kyushu University, Fukuoka 812-8582, Japan.
Miho TeshimaDepartment of Medical Science and Technology, Graduate School of Medical Sciences, Kyushu University, Fukuoka 812-8582, Japan.
Arisa MoroishiDepartment of Medical Science and Technology, Graduate School of Medical Sciences, Kyushu University, Fukuoka 812-8582, Japan.
Yoshikazu MurakamiYamaguchi Red Cross Hospital, Yamaguchi 753-8519, Japan.
Yoshikazu UmenoDepartment of Diabetes, Oita Red Cross Hospital, Oita 870-0033, Japan.
Yasushi YokogawaDepartment of Internal Medicine, Hamanomachi Hospital, Fukuoka 810-8539, Japan.
Kazuhiko KogawaDepartment of Internal Medicine, Hamanomachi Hospital, Fukuoka 810-8539, Japan.
Kenichi IzumiDepartmtent of Hepatology, Diabetes and Endocrinology, Saga University, Saga 849-8501, Japan.
Keizo AnzaiDepartmtent of Hepatology, Diabetes and Endocrinology, Saga University, Saga 849-8501, Japan.
Ryuichi IwakiriDepartment of Internal Medicine & Gastrointestinal Endoscopy, School of Medicine, Saga University, Saga 849-8501, Japan.
Kazuyuki HamaguchiDepartment of Medicine, School of Medicine, Oita University, 849-8501, Oita 879-5593, Japan.
Nobuhiro SasakiDepartment of Diabetes and Metabolism, Fukuoka Red Cross Hospital, Fukuoka 815-8555, Japan.
Sakae NoharaDepartment of Diabetes and Metabolism, Fukuoka Red Cross Hospital, Fukuoka 815-8555, Japan.
Eiko YoshidaDepartment of Medicine and Biosystemic Science, Graduate School of Medical Sciences, Kyushu University, Fukuoka 812-8582, Japan.
Mine HaradaDepartment of Medicine and Biosystemic Science, Graduate School of Medical Sciences, Kyushu University, Fukuoka 812-8582, Japan.
Koichi AkashiDepartment of Medicine and Biosystemic Science, Graduate School of Medical Sciences, Kyushu University, Fukuoka 812-8582, Japan.
Toshihiko YanaseDepartment of Clinical Laboratory Medicine, School of Medicine, Fukuoka University, Fukuoka 814-0180, Japan ; Department of Diabetology and Metabolism, School of Medicine, Fukuoka University, Fukuoka 814-0180, Japan.
Junko OnoDepartment of Clinical Laboratory Medicine, School of Medicine, Fukuoka University, Fukuoka 814-0180, Japan ; Department of Diabetology and Metabolism, School of Medicine, Fukuoka University, Fukuoka 814-0180, Japan.
Toshimitsu OkedaDepartment of Internal Medicine, Shinkokura Hospital, Kitakyushu 803-8505, Japan.
Ryoji FujimotoDepartment of Internal Medicine, Shinkokura Hospital, Kitakyushu 803-8505, Japan.
Kenji IharaDepartment of Pediatrics, Graduate School of Medical Sciences, Kyushu University, Fukuoka 812-8582, Japan.
Toshiro HaraDepartment of Pediatrics, Graduate School of Medical Sciences, Kyushu University, Fukuoka 812-8582, Japan.
Yohei KikuchiDepartment of Medicine and Clinical Sciences, Graduate School of Medical Sciences, Kyushu University, Fukuoka 812-8582, Japan.
Masanori IwaseDepartment of Medicine and Clinical Sciences, Graduate School of Medical Sciences, Kyushu University, Fukuoka 812-8582, Japan.
Takanari KitazonoDepartment of Medicine and Clinical Sciences, Graduate School of Medical Sciences, Kyushu University, Fukuoka 812-8582, Japan.
Fumiko KojimaDepartment of Medical Science and Technology, Graduate School of Medical Sciences, Kyushu University, Fukuoka 812-8582, Japan.
Suminori KonoNational Institute of Health and Nutrition, Tokyo 162-8636, Japan.
Hironori KurisakiDepartment of Medical Science and Technology, Graduate School of Medical Sciences, Kyushu University, Fukuoka 812-8582, Japan.
Shiori KondoMatsuyama Red Cross Hospital, Matsuyama 790-8524, Japan.
Hitoshi KatsutaDepartment of Medical Science and Technology, Graduate School of Medical Sciences, Kyushu University, Fukuoka 812-8582, Japan ; Department of Medicine and Biosystemic Science, Graduate School of Medical Sciences, Kyushu University, Fukuoka 812-8582, Japan ; Department of Internal Medicine, Sawara Hospital, Sawara, Fukuoka 819-0002, Japan.
Kyushu University · JPJapanese Red Cross Fukuoka Hospital · JPSaga University · JPFukuoka University · JPHamanomachi Hospital · JPShinKokura Hospital · JPMatsuyama Red Cross Hospital · JPNational Institute of Infectious Diseases · JPOita Red Cross Hospital · JPYamaguchi Red Cross Hospital · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundRecently, natural mutation of Tyrosine kinase 2 (Tyk2) gene has been shown to determine susceptibility to murine virus-induced diabetes. In addition, a previous human genome-wide study suggested the type 1 diabetes (T1D) susceptibility region to be 19p13, where the human TYK2 gene is located (19p13.2).

methodsPolymorphisms of TYK2 gene at the promoter region and exons were studied among 331 healthy controls, and 302 patients with T1D and 314 with type 2 diabetes (T2D) in the Japanese.

findingsA TYK2 promoter haplotype with multiple genetic polymorphisms, which are in complete linkage disequilibrium, named TYK2 promoter variant, presenting decreased promoter activity, is associated with an increased risk of not only T1D (odds ratio (OR), 2.4; 95% confidence interval (CI), 1.2 to 4.6; P = 0.01), but also T2D (OR, 2.1; 95% CI, 1.1 to 4.1; P = 0.03). The risk is high in patients with T1D associated with flu-like syndrome at diabetes onset and also those without anti-glutamic acid decarboxylase autoantibody.

interpretationThe TYK2 promoter variant is associated with an overall risk for diabetes, serving a good candidate as a virus-induced diabetes susceptibility gene in humans.

fundingMinistry of Education, Culture, Sports, Science and Technology and of Health, Labor and Welfare of Japan.

Indexed as

AdolescentAdultAgedAged, 80 and overAge of OnsetAsian PeopleBase SequenceCase-Control StudiesChildDiabetes Mellitus, Type 1Diabetes Mellitus, Type 2FemaleGenetic Predisposition to DiseaseHumansMaleMiddle AgedTYK2 KinaseDiabetes mellitusPolymorphismPromoter variantTyrosine kinase 2 (TYK2)Virus

Identifiers

PMID26288847
PMCPMC4534683
OpenAlexW1554940746

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.